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This orthogroup contains 207 genes from 145 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 207 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR43995 | PRE-MRNA-PROCESSING FACTOR 19 | 186 / 207 | 89.9% | 99.5% of 187 | ≥80% support |
| Pfam | PF00400 | WD40 — WD domain, G-beta repeat | 182 / 207 | 87.9% | 97.9% of 186 | ≥80% support |
| Pfam | PF08606 | Prp19 | 174 / 207 | 84.1% | 93.6% of 186 | ≥80% support |
| GO | GO:0004842 Molecular Function | ubiquitin-protein transferase activity | 187 / 207 | 90.3% | 99.5% of 188 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 186 / 207 | 89.9% | 98.9% of 188 | ≥80% support |
| GO | GO:0000974 Cellular Component | Prp19 complex | 186 / 207 | 89.9% | 98.9% of 188 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 186 / 207 | 89.9% | 98.9% of 188 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 186 / 207 | 89.9% | 98.9% of 188 | ≥80% support |
| GO | GO:0006281 Biological Process | DNA repair | 186 / 207 | 89.9% | 98.9% of 188 | ≥80% support |
| GO | GO:0061630 Molecular Function | ubiquitin protein ligase activity | 186 / 207 | 89.9% | 98.9% of 188 | ≥80% support |
| GO | GO:0071006 Cellular Component | U2-type catalytic step 1 spliceosome | 186 / 207 | 89.9% | 98.9% of 188 | ≥80% support |
| GO | GO:0016567 Biological Process | protein ubiquitination | 172 / 207 | 83.1% | 91.5% of 188 | ≥80% support |
| KEGG | K10599 | PRPF19, PRP19 — DNA repair and recombination proteins | 171 / 207 | 82.6% | 99.4% of 172 | ≥80% support |
| Pfam | PF04564 | U-box | 132 / 207 | 63.8% | 71.0% of 186 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene06919.t1 | XP_020894539.1 | pre-mRNA-processing factor 19 [Exaiptasia diaphana] | Q08E38 Pre-mRNA-processing factor 19 OS=Bos taurus OX=9913 GN=PRPF1 | JBrowse |
