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This orthogroup contains 87 genes from 75 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 87 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR28580 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5 | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| Pfam | PF06331 | Tfb5 | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| GO | GO:0000439 Cellular Component | transcription factor TFIIH core complex | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| GO | GO:0005675 Cellular Component | transcription factor TFIIH holo complex | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| GO | GO:0006289 Biological Process | nucleotide-excision repair | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| GO | GO:0006294 Biological Process | nucleotide-excision repair, preincision complex assembly | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| GO | GO:0006366 Biological Process | transcription by RNA polymerase II | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| GO | GO:0006367 Biological Process | transcription initiation at RNA polymerase II promoter | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| GO | GO:0070816 Biological Process | obsolete phosphorylation of RNA polymerase II C-terminal domain | 77 / 87 | 88.5% | 100.0% of 77 | ≥80% support |
| KEGG | K10845 | TTDA, GTF2H5, TFB5 — DNA repair and recombination proteins | 69 / 87 | 79.3% | 100.0% of 69 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene23754.t1 | KXJ20514.1 | General transcription factor IIH subunit 5 [Exaiptasia diaphana] | Q5ZKH0 General transcription factor IIH subunit 5 OS=Gallus gallus | JBrowse |
