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This orthogroup contains 351 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 351 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15499 | HMG BOX-CONTAINING PROTEIN 1 | 296 / 351 | 84.3% | 99.7% of 297 | ≥80% support |
| Pfam | PF00505 | HMG_box — HMG (high mobility group) box | 281 / 351 | 80.1% | 93.4% of 301 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 297 / 351 | 84.6% | 98.0% of 303 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 296 / 351 | 84.3% | 97.7% of 303 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 296 / 351 | 84.3% | 97.7% of 303 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 296 / 351 | 84.3% | 97.7% of 303 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 296 / 351 | 84.3% | 97.7% of 303 | ≥80% support |
| Pfam | PF08517 | AXH | 258 / 351 | 73.5% | 85.7% of 301 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 272 / 351 | 77.5% | 89.8% of 303 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 271 / 351 | 77.2% | 89.4% of 303 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora microphthalma | amic_s0051.g50.t1 | XP_029195303.2 | HMG box-containing protein 1-like isoform X1 [Acropora millepora] | Q2KJ34 HMG box-containing protein 1 OS=Bos taurus OX=9913 GN=HBP1 P | JBrowse |
