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This orthogroup contains 278 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 278 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13318 | UNCHARACTERIZED | 165 / 278 | 59.4% | 71.4% of 231 | ≥50% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 177 / 278 | 63.7% | 80.8% of 219 | ≥50% support |
| Pfam | PF12937 | F-box-like | 148 / 278 | 53.2% | 67.6% of 219 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 195 / 278 | 70.1% | 83.7% of 233 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 178 / 278 | 64.0% | 76.4% of 233 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 177 / 278 | 63.7% | 76.0% of 233 | ≥50% support |
| GO | GO:0019005 Cellular Component | SCF ubiquitin ligase complex | 166 / 278 | 59.7% | 71.2% of 233 | ≥50% support |
| GO | GO:0031146 Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 166 / 278 | 59.7% | 71.2% of 233 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora microphthalma | amic_s0019.g44.t1 | XP_029193639.2 | F-box/LRR-repeat protein 2-like isoform X5 [Acropora millepora] | – | JBrowse |
| Acropora microphthalma | amic_s4786.g1.t1 | XP_015760323.1 | PREDICTED: F-box/LRR-repeat protein 2-like isoform X3 [Acropora digitifera] | – | JBrowse |
