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This orthogroup contains 262 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 262 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13257 | NUCLEOPORIN NUP84-RELATED | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| Pfam | PF10168 | Nup88 — Nuclear pore component | 233 / 262 | 88.9% | 99.6% of 234 | ≥80% support |
| GO | GO:0000055 Biological Process | ribosomal large subunit export from nucleus | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| GO | GO:0000056 Biological Process | ribosomal small subunit export from nucleus | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| GO | GO:0005643 Cellular Component | nuclear pore | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| GO | GO:0006406 Biological Process | mRNA export from nucleus | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| GO | GO:0006606 Biological Process | protein import into nucleus | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| GO | GO:0006913 Biological Process | nucleocytoplasmic transport | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| GO | GO:0017056 Molecular Function | structural constituent of nuclear pore | 221 / 262 | 84.4% | 99.6% of 222 | ≥80% support |
| KEGG | K14318 | NUP88 — Messenger RNA biogenesis | 161 / 262 | 61.5% | 98.8% of 163 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora microphthalma | amic_s0018.g78.t1 | XP_029194339.1 | nucleoporin 88-like isoform X2 [Acropora millepora] | O08658 Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora microphthalma | amic_s0018.g78.t2 | XP_029194338.1 | nucleoporin 88-like isoform X1 [Acropora millepora] | O08658 Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=1 | JBrowse |
