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This orthogroup contains 211 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 211 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR14089 | PRE-MRNA-SPLICING FACTOR RBM22 | 179 / 211 | 84.8% | 100.0% of 179 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 180 / 211 | 85.3% | 96.3% of 187 | ≥80% support |
| GO | GO:0000974 Cellular Component | Prp19 complex | 179 / 211 | 84.8% | 95.7% of 187 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 179 / 211 | 84.8% | 95.7% of 187 | ≥80% support |
| GO | GO:0017070 Molecular Function | U6 snRNA binding | 179 / 211 | 84.8% | 95.7% of 187 | ≥80% support |
| GO | GO:0036002 Molecular Function | pre-mRNA binding | 179 / 211 | 84.8% | 95.7% of 187 | ≥80% support |
| GO | GO:0071006 Cellular Component | U2-type catalytic step 1 spliceosome | 179 / 211 | 84.8% | 95.7% of 187 | ≥80% support |
| GO | GO:0071007 Cellular Component | U2-type catalytic step 2 spliceosome | 179 / 211 | 84.8% | 95.7% of 187 | ≥80% support |
| GO | GO:0046872 Molecular Function | metal ion binding | 170 / 211 | 80.6% | 90.9% of 187 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 168 / 211 | 79.6% | 94.9% of 177 | ≥50% support |
| Pfam | PF21369 | STL11_N — STL11, N-terminal | 168 / 211 | 79.6% | 94.9% of 177 | ≥50% support |
| KEGG | K12872 | RBM22, SLT11 — Spliceosome | 159 / 211 | 75.4% | 100.0% of 159 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora microphthalma | amic_s0014.g197.t1 | XP_029194626.2 | pre-mRNA-splicing factor RBM22-like [Acropora millepora] | Q6NZZ9 Pre-mRNA-splicing factor RBM22 OS=Danio rerio OX=7955 GN=rbm | JBrowse |
