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This orthogroup contains 984 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 984 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 873 / 984 | 88.7% | 98.6% of 885 | ≥80% support |
| Pfam | PF00412 | LIM | 840 / 984 | 85.4% | 94.9% of 885 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 883 / 984 | 89.7% | 99.8% of 885 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 874 / 984 | 88.8% | 98.8% of 885 | ≥80% support |
| PANTHER | PTHR24208 | LIM/HOMEOBOX PROTEIN LHX | 509 / 984 | 51.7% | 57.6% of 884 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 622 / 984 | 63.2% | 70.3% of 885 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 513 / 984 | 52.1% | 58.0% of 885 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 512 / 984 | 52.0% | 57.9% of 885 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 509 / 984 | 51.7% | 57.5% of 885 | ≥50% support |
| GO | GO:0030182 Biological Process | neuron differentiation | 509 / 984 | 51.7% | 57.5% of 885 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astreopora myriophthalma | BRAKERYMEP00000006574.1 | BAQ19131.1 | Lhx6/8 LIM homeobox protein [Acropora digitifera] | Q8IRC7 LIM/homeobox protein Awh OS=Drosophila melanogaster OX=7227 | JBrowse |
| Astreopora myriophthalma | BRAKERYMEP00000006575.1 | XP_029196231.1 | LIM/homeobox protein Awh-like isoform X3 [Acropora millepora] | Q8IRC7 LIM/homeobox protein Awh OS=Drosophila melanogaster OX=7227 | JBrowse |
| Astreopora myriophthalma | BRAKERYMEP00000011190.1 | CAH3144780.1 | unnamed protein product [Porites evermanni] | P50211 Insulin gene enhancer protein ISL-1 OS=Gallus gallus OX=9031 | JBrowse |
| Astreopora myriophthalma | BRAKERYMEP00000013578.1 | CAH3155443.1 | unnamed protein product [Porites lobata] | Q969G2 LIM/homeobox protein Lhx4 OS=Homo sapiens OX=9606 GN=LHX4 PE | JBrowse |
| Astreopora myriophthalma | BRAKERYMEP00000033663.1 | XP_029194303.1 | LIM/homeobox protein Lhx1-like [Acropora millepora] | P29674 LIM/homeobox protein Lhx1 OS=Xenopus laevis OX=8355 GN=lhx1 | JBrowse |
| Astreopora myriophthalma | g14843.t1.1 | none | – | JBrowse | |
| Astreopora myriophthalma | g21061.t1.1 | none | – | JBrowse | |
| Astreopora myriophthalma | g21061.t2.1 | none | – | JBrowse | |
| Astreopora myriophthalma | g32387.t1.1 | none | – | JBrowse | |
| Astreopora myriophthalma | g3450.t1.1 | none | – | JBrowse |
