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This orthogroup contains 294 genes from 145 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 294 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13952 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | 246 / 294 | 83.7% | 99.2% of 248 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 246 / 294 | 83.7% | 98.8% of 249 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 246 / 294 | 83.7% | 98.8% of 249 | ≥80% support |
| GO | GO:0017069 Molecular Function | snRNA binding | 246 / 294 | 83.7% | 98.8% of 249 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 246 / 294 | 83.7% | 98.8% of 249 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 245 / 294 | 83.3% | 98.4% of 249 | ≥80% support |
| GO | GO:0030619 Molecular Function | U1 snRNA binding | 245 / 294 | 83.3% | 98.4% of 249 | ≥80% support |
| GO | GO:0071004 Cellular Component | U2-type prespliceosome | 245 / 294 | 83.3% | 98.4% of 249 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 243 / 294 | 82.7% | 97.6% of 249 | ≥80% support |
| Pfam | PF12220 | U1snRNP70_N — U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | 228 / 294 | 77.6% | 94.6% of 241 | ≥50% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 224 / 294 | 76.2% | 93.0% of 241 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 228 / 294 | 77.6% | 91.6% of 249 | ≥50% support |
| KEGG | K11093 | SNRP70 — Spliceosome | 177 / 294 | 60.2% | 97.3% of 182 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astreopora myriophthalma | BRAKERYMEP00000000891.1 | XP_029189988.1 | LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein 70 kDa-like [Acropora millepora] | Q66II8 U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropica | JBrowse |
| Astreopora myriophthalma | g15507.t1.1 | none | – | JBrowse |
