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This orthogroup contains 250 genes from 147 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 250 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11864 | PRE-MRNA-PROCESSING PROTEIN PRP40 | 207 / 250 | 82.8% | 99.5% of 208 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 207 / 250 | 82.8% | 99.0% of 209 | ≥80% support |
| GO | GO:0045292 Biological Process | mRNA cis splicing, via spliceosome | 207 / 250 | 82.8% | 99.0% of 209 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 206 / 250 | 82.4% | 98.6% of 209 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 206 / 250 | 82.4% | 98.6% of 209 | ≥80% support |
| GO | GO:0071004 Cellular Component | U2-type prespliceosome | 206 / 250 | 82.4% | 98.6% of 209 | ≥80% support |
| Pfam | PF01846 | FF | 198 / 250 | 79.2% | 94.3% of 210 | ≥50% support |
| Pfam | PF00397 | WW | 189 / 250 | 75.6% | 90.0% of 210 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 189 / 250 | 75.6% | 90.4% of 209 | ≥50% support |
| KEGG | K12821 | PRPF40, PRP40 — Spliceosome | 173 / 250 | 69.2% | 97.7% of 177 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astreopora myriophthalma | BRAKERYMEP00000025589.1 | XP_015761269.1 | PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Acropora digitifera] | Q9R1C7 Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=1 | JBrowse |
| Astreopora myriophthalma | BRAKERYMEP00000025591.1 | CAH3147299.1 | unnamed protein product, partial [Porites lobata] | – | JBrowse |
| Astreopora myriophthalma | BRAKERYMEP00000025599.1 | XP_029200486.2 | pre-mRNA-processing factor 40 homolog B-like [Acropora millepora] | Q9R1C7 Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=1 | JBrowse |
| Astreopora myriophthalma | g25119.t1.1 | none | – | JBrowse | |
| Astreopora myriophthalma | g25127.t1.1 | none | – | JBrowse | |
| Astreopora myriophthalma | g25128.t1.1 | none | – | JBrowse |
