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This orthogroup contains 242 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 242 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11125 | SUPPRESSOR OF TY 5 | 210 / 242 | 86.8% | 99.5% of 211 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 210 / 242 | 86.8% | 99.5% of 211 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 210 / 242 | 86.8% | 99.5% of 211 | ≥80% support |
| GO | GO:0006368 Biological Process | transcription elongation by RNA polymerase II | 210 / 242 | 86.8% | 99.5% of 211 | ≥80% support |
| GO | GO:0032044 Cellular Component | DSIF complex | 210 / 242 | 86.8% | 99.5% of 211 | ≥80% support |
| GO | GO:0032784 Biological Process | regulation of DNA-templated transcription elongation | 210 / 242 | 86.8% | 99.5% of 211 | ≥80% support |
| Pfam | PF00467 | KOW | 185 / 242 | 76.5% | 90.2% of 205 | ≥50% support |
| Pfam | PF03439 | Spt5-NGN — Early transcription elongation factor of RNA pol II, NGN section | 175 / 242 | 72.3% | 85.4% of 205 | ≥50% support |
| Pfam | PF11942 | Spt5_N — Spt5 transcription elongation factor, acidic N-terminal | 127 / 242 | 52.5% | 62.0% of 205 | ≥50% support |
| GO | GO:0006354 Biological Process | DNA-templated transcription elongation | 180 / 242 | 74.4% | 85.3% of 211 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 179 / 242 | 74.0% | 84.8% of 211 | ≥50% support |
| GO | GO:0140673 Biological Process | transcription elongation-coupled chromatin remodeling | 152 / 242 | 62.8% | 72.0% of 211 | ≥50% support |
| KEGG | K15172 | SUPT5H, SPT5 — Messenger RNA biogenesis | 174 / 242 | 71.9% | 98.3% of 177 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astreopora myriophthalma | BRAKERYMEP00000003634.1 | XP_029180998.2 | transcription elongation factor SPT5-like [Acropora millepora] | Q5R405 Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 | JBrowse |
| Astreopora myriophthalma | g16973.t1.1 | none | – | JBrowse |
