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This orthogroup contains 213 genes from 129 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 213 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR28559 | DNA REPAIR PROTEIN XRCC4 | 180 / 213 | 84.5% | 100.0% of 180 | ≥80% support |
| Pfam | PF06632 | XRCC4 | 182 / 213 | 85.5% | 100.0% of 182 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 184 / 213 | 86.4% | 100.0% of 184 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 184 / 213 | 86.4% | 100.0% of 184 | ≥80% support |
| GO | GO:0006302 Biological Process | double-strand break repair | 184 / 213 | 86.4% | 100.0% of 184 | ≥80% support |
| GO | GO:0006310 Biological Process | DNA recombination | 184 / 213 | 86.4% | 100.0% of 184 | ≥80% support |
| GO | GO:0005958 Cellular Component | DNA-dependent protein kinase-DNA ligase 4 complex | 180 / 213 | 84.5% | 97.8% of 184 | ≥80% support |
| GO | GO:0006303 Biological Process | double-strand break repair via nonhomologous end joining | 180 / 213 | 84.5% | 97.8% of 184 | ≥80% support |
| GO | GO:0010165 Biological Process | response to X-ray | 180 / 213 | 84.5% | 97.8% of 184 | ≥80% support |
| GO | GO:0032807 Cellular Component | DNA ligase IV complex | 180 / 213 | 84.5% | 97.8% of 184 | ≥80% support |
| GO | GO:0051103 Biological Process | DNA ligation involved in DNA repair | 180 / 213 | 84.5% | 97.8% of 184 | ≥80% support |
| GO | GO:0051351 Biological Process | positive regulation of ligase activity | 180 / 213 | 84.5% | 97.8% of 184 | ≥80% support |
| KEGG | K10886 | XRCC4 — DNA repair and recombination proteins | 136 / 213 | 63.9% | 100.0% of 136 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astreopora myriophthalma | BRAKERYMEP00000003799.1 | XP_015753573.1 | PREDICTED: DNA repair protein XRCC4-like [Acropora digitifera] | Q924T3 DNA repair protein XRCC4 OS=Mus musculus OX=10090 GN=Xrcc4 P | JBrowse |
| Astreopora myriophthalma | BRAKERYMEP00000003800.1 | XP_029181177.2 | DNA repair protein XRCC4-like isoform X1 [Acropora millepora] | Q924T3 DNA repair protein XRCC4 OS=Mus musculus OX=10090 GN=Xrcc4 P | JBrowse |
| Astreopora myriophthalma | g23304.t1.1 | none | – | JBrowse | |
| Astreopora myriophthalma | g23304.t2.1 | none | – | JBrowse |
