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This orthogroup contains 868 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 868 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 766 / 868 | 88.3% | 100.0% of 766 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 767 / 868 | 88.4% | 100.0% of 767 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 766 / 868 | 88.3% | 99.9% of 767 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap13.796 | CAH3183130.1 | unnamed protein product [Porites evermanni] | P41891 Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC | JBrowse |
| Astrangia poculata | evm.model.Ap4.428 | XP_027053446.1 | RNA-binding motif protein, X chromosome-like isoform X2 [Pocillopora damicornis] | W8E7I1 RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 S | JBrowse |
| Astrangia poculata | evm.model.Ap4.429 | XP_020632348.1 | glycine-rich RNA-binding protein 1-like [Orbicella faveolata] | Q03251 Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana O | JBrowse |
| Astrangia poculata | evm.model.Ap4.430 | XP_020632349.1 | glycine-rich RNA-binding protein 1-like [Orbicella faveolata] | Q08937 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylve | JBrowse |
