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This orthogroup contains 786 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 786 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| GO | GO:0003968 Molecular Function | RNA-dependent RNA polymerase activity | 635 / 786 | 80.8% | 94.6% of 671 | ≥80% support |
| PANTHER | PTHR23079 | RNA-DEPENDENT RNA POLYMERASE | 620 / 786 | 78.9% | 92.4% of 671 | ≥50% support |
| Pfam | PF05183 | RdRP — RNA dependent RNA polymerase | 620 / 786 | 78.9% | 93.5% of 663 | ≥50% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 402 / 786 | 51.2% | 60.6% of 663 | ≥50% support |
| GO | GO:0030422 Biological Process | siRNA processing | 620 / 786 | 78.9% | 92.4% of 671 | ≥50% support |
| GO | GO:0031380 Cellular Component | nuclear RNA-directed RNA polymerase complex | 620 / 786 | 78.9% | 92.4% of 671 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora pulchra | FUN_000213-T1 | XP_029212110.2 | uncharacterized protein LOC114975959 [Acropora millepora] | Q0DXS3 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subs | JBrowse |
| Acropora pulchra | FUN_000213-T2 | XP_029212110.2 | uncharacterized protein LOC114975959 [Acropora millepora] | Q0DXS3 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subs | JBrowse |
| Acropora pulchra | FUN_000419-T1 | XP_029189122.2 | uncharacterized protein LOC114956239 isoform X1 [Acropora millepora] | Q0DXS3 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subs | JBrowse |
| Acropora pulchra | FUN_029179-T1 | XP_029201633.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC114966064 [Acropora millepora] | Q9LQV2 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=37 | JBrowse |
| Acropora pulchra | FUN_029180-T1 | XP_029201633.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC114966064 [Acropora millepora] | Q0DXS3 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subs | JBrowse |
| Acropora pulchra | FUN_029181-T1 | XP_029201633.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC114966064 [Acropora millepora] | Q0CEI2 Dicer-like protein 2 OS=Aspergillus terreus (strain NIH 2624 | JBrowse |
| Acropora pulchra | FUN_029182-T1 | XP_015753708.1 | PREDICTED: RNA-dependent RNA polymerase 1-like [Acropora digitifera] | Q9LQV2 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=37 | JBrowse |
| Acropora pulchra | FUN_029183-T1 | XP_029201633.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC114966064 [Acropora millepora] | – | JBrowse |
| Acropora pulchra | FUN_029184-T1 | XP_015753769.1 | PREDICTED: uncharacterized protein LOC107333465 [Acropora digitifera] | Q0DXS3 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subs | JBrowse |
| Acropora pulchra | FUN_029200-T1 | XP_015753746.1 | PREDICTED: uncharacterized protein LOC107333443 isoform X1 [Acropora digitifera] | Q9LQV2 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=37 | JBrowse |
