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This orthogroup contains 342 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 342 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15588 | LSM1 | 298 / 342 | 87.1% | 100.0% of 298 | ≥80% support |
| Pfam | PF01423 | LSM | 295 / 342 | 86.3% | 100.0% of 295 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 298 / 342 | 87.1% | 100.0% of 298 | ≥80% support |
| GO | GO:0016070 Biological Process | RNA metabolic process | 298 / 342 | 87.1% | 100.0% of 298 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora pulchra | FUN_029025-T1 | XP_044183030.1 | U6 snRNA-associated Sm-like protein LSm8 [Acropora millepora] | Q3ZCE0 U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=99 | JBrowse |
| Acropora pulchra | FUN_042045-T1 | XP_015752092.1 | PREDICTED: U6 snRNA-associated Sm-like protein LSm1 isoform X2 [Acropora digitifera] | Q8VC85 U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus OX= | JBrowse |
