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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Clytia hemisphaerica | XP_066910632.1 | AAX58756.1 | homeodomain protein Msx [Podocoryna carnea] | Q03357 Homeobox protein MSH-A OS=Danio rerio OX=7955 GN=msxa PE=2 S | JBrowse |
| Clytia hemisphaerica | XP_066911720.1 | ACM62729.1 | homeodomain transcription factor protein GSX [Clytia hemisphaerica] | P23682 Homeobox protein Hox-B3 OS=Gallus gallus OX=9031 GN=HOXB3 PE | JBrowse |
| Clytia hemisphaerica | XP_066913657.1 | OTF76909.1 | homeobox protein HMX-like protein [Euroglyphus maynei] | Q22910 Homeobox protein ceh-31 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Clytia hemisphaerica | XP_066917032.1 | ACM62729.1 | homeodomain transcription factor protein GSX [Clytia hemisphaerica] | P23682 Homeobox protein Hox-B3 OS=Gallus gallus OX=9031 GN=HOXB3 PE | JBrowse |
| Clytia hemisphaerica | XP_066917863.1 | ACM62730.1 | Antp family homeodomain transcription factor protein HD01 [Clytia hemisphaerica] | Q9DDB0 Ventral anterior homeobox 1b OS=Xenopus laevis OX=8355 GN=va | JBrowse |
| Clytia hemisphaerica | XP_066919173.1 | XP_048801774.1 | homeobox protein vex1-like [Lagopus muta] | Q9W769 Homeobox protein vex1 OS=Xenopus laevis OX=8355 GN=vex1 PE=2 | JBrowse |
| Clytia hemisphaerica | XP_066920833.1 | CAR62458.1 | putative Pdx/Xlox homeodomain transcription factor, partial [Clytia hemisphaerica] | P17138 Homeobox protein HTR-A2 (Fragment) OS=Helobdella triserialis | JBrowse |
| Clytia hemisphaerica | XP_066922676.1 | EDO43402.1 | predicted protein, partial [Nematostella vectensis] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Clytia hemisphaerica | XP_066923784.1 | CAB88387.1 | homeoprotein [Hydra vulgaris] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Clytia hemisphaerica | XP_066924348.1 | ACM62736.1 | Mox homeodomain transcription factor protein [Clytia hemisphaerica] | P32442 Homeobox protein MOX-1 OS=Mus musculus OX=10090 GN=Meox1 PE= | JBrowse |
| Clytia hemisphaerica | XP_066928265.1 | GFR75859.1 | homeobox protein ceh-1-like [Elysia marginata] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Clytia hemisphaerica | XP_066928588.1 | PIO39624.1 | hypothetical protein AB205_0214230 [Lithobates catesbeianus] | A5YC49 Homeobox protein Nkx-6.3 OS=Xenopus laevis OX=8355 GN=nkx6-3 | JBrowse |
| Clytia hemisphaerica | XP_066928694.1 | XP_002165751.1 | homeobox protein ceh-9 [Hydra vulgaris] | Q28ET4 Homeobox protein vent1 OS=Xenopus tropicalis OX=8364 GN=vent | JBrowse |
| Clytia hemisphaerica | XP_066928969.1 | ACM62733.1 | Hox9-14A homeodomain transcription factor protein [Clytia hemisphaerica] | P09020 Homeobox protein Hox-C5 (Fragment) OS=Xenopus laevis OX=8355 | JBrowse |
| Clytia hemisphaerica | XP_066929350.1 | ACT36586.1 | Anthox1a, partial [Nematostella vectensis] | P23459 Homeobox protein Hox-D8 OS=Gallus gallus OX=9031 GN=HOXD8 PE | JBrowse |
| Clytia hemisphaerica | XP_066930153.1 | CAA72534.1 | Cn-ems protein [Hydractinia symbiolongicarpus] | Q6GLB9 Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 | JBrowse |
| Clytia hemisphaerica | XP_066932324.1 | XP_009011692.1 | hypothetical protein HELRODRAFT_148410, partial [Helobdella robusta] | Q504H8 Homeobox protein HMX3 OS=Danio rerio OX=7955 GN=hmx3 PE=2 SV | JBrowse |
| Clytia hemisphaerica | XP_066932681.1 | BAA94091.1 | cnox2-Pc [Podocoryna carnea] | P31261 Homeobox protein Hox-A2 (Fragment) OS=Notophthalmus viridesc | JBrowse |
| Clytia hemisphaerica | XP_066932687.1 | ACM62735.1 | Hox9-14C homeodomain transcription factor protein [Clytia hemisphaerica] | Q9IA25 Homeobox protein Hox-A7 OS=Heterodontus francisci OX=7792 GN | JBrowse |
| Clytia hemisphaerica | XP_066933543.1 | ACM62725.1 | Cdx caudal homeodomain protein [Clytia hemisphaerica] | P14839 Homeobox protein Hox-B6 (Fragment) OS=Gallus gallus OX=9031 | JBrowse |
