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Support counts the member genes carrying the term. % of genes is that count over all 984 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 873 / 984 | 88.7% | 98.6% of 885 | ≥80% support |
| Pfam | PF00412 | LIM | 840 / 984 | 85.4% | 94.9% of 885 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 883 / 984 | 89.7% | 99.8% of 885 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 874 / 984 | 88.8% | 98.8% of 885 | ≥80% support |
| PANTHER | PTHR24208 | LIM/HOMEOBOX PROTEIN LHX | 509 / 984 | 51.7% | 57.6% of 884 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 622 / 984 | 63.2% | 70.3% of 885 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 513 / 984 | 52.1% | 58.0% of 885 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 512 / 984 | 52.0% | 57.9% of 885 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 509 / 984 | 51.7% | 57.5% of 885 | ≥50% support |
| GO | GO:0030182 Biological Process | neuron differentiation | 509 / 984 | 51.7% | 57.5% of 885 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Clytia hemisphaerica | XP_066913854.1 | KAF0873079.1 | LHX5 protein, partial [Crocuta crocuta] | Q9H2C1 LIM/homeobox protein Lhx5 OS=Homo sapiens OX=9606 GN=LHX5 PE | JBrowse |
| Clytia hemisphaerica | XP_066921614.1 | KAJ8029244.1 | Insulin proteinenhancer protein isl-1 [Holothuria leucospilota] | P53405 Insulin gene enhancer protein isl-1 OS=Danio rerio OX=7955 G | JBrowse |
| Clytia hemisphaerica | XP_066927605.1 | BAQ19162.1 | Lhx6/8 LIM homeobox protein, partial [Cladonema pacificum] | Q8IRC7 LIM/homeobox protein Awh OS=Drosophila melanogaster OX=7227 | JBrowse |
