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This orthogroup contains 281 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 281 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23139 | RNA-BINDING PROTEIN | 244 / 281 | 86.8% | 99.6% of 245 | ≥80% support |
| GO | GO:0000243 Cellular Component | commitment complex | 244 / 281 | 86.8% | 99.6% of 245 | ≥80% support |
| GO | GO:0008187 Molecular Function | poly-pyrimidine tract binding | 244 / 281 | 86.8% | 99.6% of 245 | ≥80% support |
| GO | GO:0016607 Cellular Component | nuclear speck | 244 / 281 | 86.8% | 99.6% of 245 | ≥80% support |
| GO | GO:0030628 Molecular Function | pre-mRNA 3'-splice site binding | 244 / 281 | 86.8% | 99.6% of 245 | ≥80% support |
| GO | GO:0071004 Cellular Component | U2-type prespliceosome | 244 / 281 | 86.8% | 99.6% of 245 | ≥80% support |
| GO | GO:0089701 Cellular Component | U2AF complex | 244 / 281 | 86.8% | 99.6% of 245 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 240 / 281 | 85.4% | 98.0% of 245 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 233 / 281 | 82.9% | 95.1% of 245 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 214 / 281 | 76.2% | 99.5% of 215 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 162 / 281 | 57.7% | 66.1% of 245 | ≥50% support |
| GO | GO:0006397 Biological Process | mRNA processing | 162 / 281 | 57.7% | 66.1% of 245 | ≥50% support |
| KEGG | K12837 | U2AF2 — Spliceosome | 179 / 281 | 63.7% | 95.2% of 188 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Catostylus mosaicus | ENSSJYP00000007493.1 | CAF0825814.1 | unnamed protein product, partial [Didymodactylos carnosus] | P26368 Splicing factor U2AF 65 kDa subunit OS=Homo sapiens OX=9606 | JBrowse |
| Catostylus mosaicus | ENSSJYP00000010892.1 | XP_047143357.1 | splicing factor U2AF 65 kDa subunit-like isoform X1 [Hydra vulgaris] | P26368 Splicing factor U2AF 65 kDa subunit OS=Homo sapiens OX=9606 | JBrowse |
