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This orthogroup contains 270 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 270 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR21551 | TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 | 218 / 270 | 80.7% | 99.5% of 219 | ≥80% support |
| GO | GO:0000290 Biological Process | deadenylation-dependent decapping of nuclear-transcribed mRNA | 218 / 270 | 80.7% | 99.5% of 219 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 218 / 270 | 80.7% | 99.5% of 219 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 218 / 270 | 80.7% | 99.5% of 219 | ≥80% support |
| GO | GO:0033962 Biological Process | P-body assembly | 218 / 270 | 80.7% | 99.5% of 219 | ≥80% support |
| Pfam | PF09770 | PAT1 | 154 / 270 | 57.0% | 95.1% of 162 | ≥50% support |
| KEGG | K12617 | PATL1, PAT1 — Messenger RNA biogenesis | 176 / 270 | 65.2% | 98.3% of 179 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Catostylus mosaicus | ENSSJYP00000018082.1 | XP_047126873.1 | protein PAT1 homolog 1 [Hydra vulgaris] | B5DEB9 Protein PAT1 homolog 2 OS=Xenopus tropicalis OX=8364 GN=patl | JBrowse |
| Catostylus mosaicus | ENSSJYP00000018093.1 | XP_047126873.1 | protein PAT1 homolog 1 [Hydra vulgaris] | Q4V7K4 Protein PAT1 homolog 2 OS=Xenopus laevis OX=8355 GN=patl2 PE | JBrowse |
