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This orthogroup contains 230 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 230 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13011 | TFIIF-ALPHA | 196 / 230 | 85.2% | 98.5% of 199 | ≥80% support |
| Pfam | PF05793 | TFIIF_alpha — Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | 201 / 230 | 87.4% | 99.0% of 203 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 203 / 230 | 88.3% | 100.0% of 203 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 203 / 230 | 88.3% | 100.0% of 203 | ≥80% support |
| GO | GO:0006367 Biological Process | transcription initiation at RNA polymerase II promoter | 202 / 230 | 87.8% | 99.5% of 203 | ≥80% support |
| GO | GO:0032968 Biological Process | positive regulation of transcription elongation by RNA polymerase II | 202 / 230 | 87.8% | 99.5% of 203 | ≥80% support |
| GO | GO:0001096 Molecular Function | TFIIF-class transcription factor complex binding | 196 / 230 | 85.2% | 96.6% of 203 | ≥80% support |
| GO | GO:0005674 Cellular Component | transcription factor TFIIF complex | 196 / 230 | 85.2% | 96.6% of 203 | ≥80% support |
| GO | GO:0016251 Molecular Function | RNA polymerase II general transcription initiation factor activity | 196 / 230 | 85.2% | 96.6% of 203 | ≥80% support |
| KEGG | K03138 | TFIIF1, GTF2F1, TFG1 — Transcription machinery | 141 / 230 | 61.3% | 97.9% of 144 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Catostylus mosaicus | ENSSJYP00000000343.1 | XP_002160103.1 | general transcription factor IIF subunit 1 isoform X1 [Hydra vulgaris] | P35269 General transcription factor IIF subunit 1 OS=Homo sapiens O | JBrowse |
