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This orthogroup contains 225 genes from 134 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 225 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR45803 | SOX100B | 201 / 225 | 89.3% | 99.0% of 203 | ≥80% support |
| Pfam | PF00505 | HMG_box — HMG (high mobility group) box | 203 / 225 | 90.2% | 100.0% of 203 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 203 / 225 | 90.2% | 100.0% of 203 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 203 / 225 | 90.2% | 100.0% of 203 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 201 / 225 | 89.3% | 99.0% of 203 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 201 / 225 | 89.3% | 99.0% of 203 | ≥80% support |
| Pfam | PF12444 | Sox_N — Sox developmental protein N terminal | 135 / 225 | 60.0% | 66.5% of 203 | ≥50% support |
| KEGG | K18435 | SOX9 — Transcription factors | 145 / 225 | 64.4% | 94.2% of 154 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Catostylus mosaicus | ENSSJYP00000008661.1 | ABY71240.1 | Sox9, partial [Leucoraja erinacea] | B7ZR65 Transcription factor Sox-9-A OS=Xenopus laevis OX=8355 GN=so | JBrowse |
| Catostylus mosaicus | ENSSJYP00000008664.1 | ABY71240.1 | Sox9, partial [Leucoraja erinacea] | B7ZR65 Transcription factor Sox-9-A OS=Xenopus laevis OX=8355 GN=so | JBrowse |
