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This orthogroup contains 214 genes from 137 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 214 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11618 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | 183 / 214 | 85.5% | 99.5% of 184 | ≥80% support |
| Pfam | PF00382 | TFIIB | 183 / 214 | 85.5% | 96.8% of 189 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 188 / 214 | 87.9% | 100.0% of 188 | ≥80% support |
| GO | GO:0070897 Biological Process | transcription preinitiation complex assembly | 188 / 214 | 87.9% | 100.0% of 188 | ≥80% support |
| GO | GO:0017025 Molecular Function | TBP-class protein binding | 185 / 214 | 86.5% | 98.4% of 188 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 183 / 214 | 85.5% | 97.3% of 188 | ≥80% support |
| GO | GO:0097550 Cellular Component | transcription preinitiation complex | 183 / 214 | 85.5% | 97.3% of 188 | ≥80% support |
| GO | GO:0006367 Biological Process | transcription initiation at RNA polymerase II promoter | 181 / 214 | 84.6% | 96.3% of 188 | ≥80% support |
| GO | GO:0016251 Molecular Function | RNA polymerase II general transcription initiation factor activity | 181 / 214 | 84.6% | 96.3% of 188 | ≥80% support |
| Pfam | PF08271 | TF_Zn_Ribbon — TFIIB zinc-binding | 159 / 214 | 74.3% | 84.1% of 189 | ≥50% support |
| KEGG | K03124 | TFIIB, GTF2B, SUA7, tfb — Transcription machinery | 171 / 214 | 79.9% | 100.0% of 171 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Catostylus mosaicus | ENSSJYP00000001804.1 | XP_047134637.1 | transcription initiation factor IIB isoform X1 [Hydra vulgaris] | P62915 Transcription initiation factor IIB OS=Mus musculus OX=10090 | JBrowse |
| Catostylus mosaicus | ENSSJYP00000001818.1 | XP_047134637.1 | transcription initiation factor IIB isoform X1 [Hydra vulgaris] | P62915 Transcription initiation factor IIB OS=Mus musculus OX=10090 | JBrowse |
