← Back to the gene family browser
This orthogroup contains 212 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 212 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR21321 | PNAS-3 RELATED | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| Pfam | PF21262 | RRP40_S1 — Exosome complex component RRP40, S1 domain | 180 / 212 | 84.9% | 94.2% of 191 | ≥80% support |
| Pfam | PF15985 | KH_6 — KH domain | 170 / 212 | 80.2% | 89.0% of 191 | ≥80% support |
| GO | GO:0000176 Cellular Component | nuclear exosome (RNase complex) | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0000177 Cellular Component | cytoplasmic exosome (RNase complex) | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0000178 Cellular Component | exosome (RNase complex) | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0000467 Biological Process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0034427 Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0034475 Biological Process | U4 snRNA 3'-end processing | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0043928 Biological Process | obsolete exonucleolytic catabolism of deadenylated mRNA | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0071034 Biological Process | CUT catabolic process | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0071035 Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0071038 Biological Process | TRAMP-dependent tRNA surveillance pathway | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| GO | GO:0071051 Biological Process | poly(A)-dependent snoRNA 3'-end processing | 188 / 212 | 88.7% | 100.0% of 188 | ≥80% support |
| KEGG | K03681 | RRP40, EXOSC3 — Messenger RNA biogenesis | 165 / 212 | 77.8% | 100.0% of 165 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Catostylus mosaicus | ENSSJYP00000004483.1 | XP_002163201.1 | exosome complex component RRP40 [Hydra vulgaris] | Q7KWX9 Putative exosome complex component rrp40 OS=Dictyostelium di | JBrowse |
| Catostylus mosaicus | ENSSJYP00000004491.1 | XP_033636789.1 | exosome complex component RRP40-like [Asterias rubens] | Q3T0E1 Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXO | JBrowse |
