← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 1,065 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12619 | RFX TRANSCRIPTION FACTOR FAMILY | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| Pfam | PF02257 | RFX_DNA_binding — RFX DNA-binding domain | 855 / 1,065 | 80.3% | 99.8% of 857 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 855 / 1,065 | 80.3% | 93.3% of 916 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 855 / 1,065 | 80.3% | 93.3% of 916 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cassiopea xamachana | Cxam_g20538.t1 | XP_046562250.1 | DNA-binding protein RFX6-like [Haliotis rubra] | Q5RJA1 DNA-binding protein RFX6 OS=Danio rerio OX=7955 GN=rfx6 PE=2 | JBrowse |
| Cassiopea xamachana | Cxam_g29828.t1 | none | – | JBrowse | |
| Cassiopea xamachana | Cxam_g30101.t1 | XP_020625679.1 | DNA-binding protein RFX2-like [Orbicella faveolata] | P48381 Transcription factor RFX3 OS=Mus musculus OX=10090 GN=Rfx3 P | JBrowse |
| Cassiopea xamachana | Cxam_g6490.t1 | CAB4004884.1 | Hypothetical predicted protein [Paramuricea clavata] | Q32NR3 DNA-binding protein RFX2 OS=Xenopus laevis OX=8355 GN=rfx2 P | JBrowse |
| Cassiopea xamachana | Cxam_g8586.t1 | KAJ7392810.1 | hypothetical protein OS493_010470 [Desmophyllum pertusum] | A0A1L8GWK2 Regulatory factor X 4 OS=Xenopus laevis OX=8355 GN=rfx4.L PE | JBrowse |
