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Support counts the member genes carrying the term. % of genes is that count over all 784 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00057 | Ldl_recept_a — Low-density lipoprotein receptor domain class A | 653 / 784 | 83.3% | 100.0% of 653 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 663 / 784 | 84.6% | 100.0% of 663 | ≥80% support |
| PANTHER | PTHR24270 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED | 542 / 784 | 69.1% | 92.2% of 588 | ≥50% support |
| GO | GO:0005886 Cellular Component | plasma membrane | 567 / 784 | 72.3% | 85.5% of 663 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cassiopea xamachana | Cxam_g12622.t1 | AFM73617.1 | lipophorin receptor, partial [Bicyclus anynana] | Q14114 Low-density lipoprotein receptor-related protein 8 OS=Homo s | JBrowse |
| Cassiopea xamachana | Cxam_g19613.t1 | TRY74474.1 | hypothetical protein TCAL_16807 [Tigriopus californicus] | C0HL13 Low-density lipoprotein receptor-related protein 2 OS=Sus sc | JBrowse |
| Cassiopea xamachana | Cxam_g29659.t1 | 6BYV_A | Solution NMR structure of cysteine-rich calcium bound domains of very low density lipoprotein receptor [Homo sapiens] | Q28832 Low-density lipoprotein receptor (Fragment) OS=Sus scrofa OX | JBrowse |
| Cassiopea xamachana | Cxam_g8571.t1 | KAI2804240.1 | Sortilin- receptor [Blomia tropicalis] | P98165 Very low-density lipoprotein receptor OS=Gallus gallus OX=90 | JBrowse |
| Cassiopea xamachana | Cxam_g9980.t1 | XP_025202492.1 | low-density lipoprotein receptor-related protein 1 [Melanaphis sacchari] | – | JBrowse |
