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Support counts the member genes carrying the term. % of genes is that count over all 35 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR30537 | HTH-TYPE TRANSCRIPTIONAL REGULATOR | 30 / 35 | 85.7% | 93.8% of 32 | ≥80% support |
| Pfam | PF03466 | LysR_substrate — LysR substrate binding domain | 31 / 35 | 88.6% | 96.9% of 32 | ≥80% support |
| Pfam | PF00126 | HTH_1 — Bacterial regulatory helix-turn-helix protein, lysR family | 29 / 35 | 82.9% | 90.6% of 32 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 32 / 35 | 91.4% | 97.0% of 33 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
| GO | GO:0043565 Molecular Function | sequence-specific DNA binding | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cassiopea xamachana | Cxam_g1070.t1 | WP_170398248.1 | transcriptional regulator GcvA [Ruegeria arenilitoris] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Cassiopea xamachana | Cxam_g2013.t1 | WP_170328592.1 | LysR substrate-binding domain-containing protein [Ruegeria arenilitoris] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Cassiopea xamachana | Cxam_g216.t1 | WP_170326392.1 | LysR family transcriptional regulator [Ruegeria arenilitoris] | P12529 HTH-type transcriptional activator AmpR OS=Citrobacter freun | JBrowse |
| Cassiopea xamachana | Cxam_g2433.t1 | WP_170544990.1 | LysR substrate-binding domain-containing protein [Ruegeria arenilitoris] | P52595 HTH-type transcriptional regulator CbbR OS=Rhodospirillum ru | JBrowse |
| Cassiopea xamachana | Cxam_g28481.t1 | WP_170334470.1 | LysR family transcriptional regulator [Ruegeria arenilitoris] | – | JBrowse |
| Cassiopea xamachana | Cxam_g4216.t1 | WP_170402782.1 | transcriptional regulator GcvA [Ruegeria arenilitoris] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Cassiopea xamachana | Cxam_g5486.t1 | WP_209224865.1 | LysR substrate-binding domain-containing protein [Ruegeria sp. R14_0] | P14145 HTH-type transcriptional activator AmpR OS=Rhodobacter capsu | JBrowse |
