← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 12 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR30376 | SIGMA FACTOR RPOH HEAT SHOCK RELATED | 10 / 12 | 83.3% | 90.9% of 11 | ≥80% support |
| Pfam | PF04545 | Sigma70_r4 — Sigma-70, region 4 | 11 / 12 | 91.7% | 100.0% of 11 | ≥80% support |
| Pfam | PF04542 | Sigma70_r2 — Sigma-70 region 2 | 10 / 12 | 83.3% | 90.9% of 11 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 11 / 12 | 91.7% | 100.0% of 11 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 11 / 12 | 91.7% | 100.0% of 11 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 11 / 12 | 91.7% | 100.0% of 11 | ≥80% support |
| KEGG | K03089 | rpoH — Transcription machinery | 7 / 12 | 58.3% | 100.0% of 7 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cassiopea xamachana | Cxam_g4148.t1 | WP_170333444.1 | RNA polymerase factor sigma-32 [Ruegeria arenilitoris] | P0CAW9 RNA polymerase sigma factor RpoH OS=Caulobacter vibrioides ( | JBrowse |
| Cassiopea xamachana | Cxam_g966.t1 | WP_170331109.1 | RNA polymerase sigma factor RpoH [Ruegeria arenilitoris] | P0CAW9 RNA polymerase sigma factor RpoH OS=Caulobacter vibrioides ( | JBrowse |
