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This orthogroup contains 144 genes from 122 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 144 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13829 | SNRNP CORE PROTEIN FAMILY MEMBER | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| Pfam | PF01423 | LSM | 125 / 144 | 86.8% | 100.0% of 125 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0005688 Cellular Component | U6 snRNP | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0006397 Biological Process | mRNA processing | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:1990726 Cellular Component | Lsm1-7-Pat1 complex | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| KEGG | K12621 | LSM2 — Spliceosome | 125 / 144 | 86.8% | 100.0% of 125 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Desmophyllum pertusum | KAJ7378153.1 | KAJ7378153.1 | U6 snRNA-associated Sm-like protein LSm2 [Desmophyllum pertusum] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
