← Back to the gene family browser
This orthogroup contains 144 genes from 122 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 144 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13829 | SNRNP CORE PROTEIN FAMILY MEMBER | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| Pfam | PF01423 | LSM | 125 / 144 | 86.8% | 100.0% of 125 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0005688 Cellular Component | U6 snRNP | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0006397 Biological Process | mRNA processing | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| GO | GO:1990726 Cellular Component | Lsm1-7-Pat1 complex | 130 / 144 | 90.3% | 100.0% of 130 | ≥80% support |
| KEGG | K12621 | LSM2 — Spliceosome | 125 / 144 | 86.8% | 100.0% of 125 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0013.g162.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Aurelia aurita | scaffold261.g21.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000003780.1 | XP_015753225.1 | PREDICTED: U6 snRNA-associated Sm-like protein LSm2 isoform X2 [Acropora digitifera] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora austera | ENSKKQP00000003788.1 | XP_015753224.1 | PREDICTED: U6 snRNA-associated Sm-like protein LSm2 isoform X1 [Acropora digitifera] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora awi | aawi_s0022.g133.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora cervicornis | KAK2567139.1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Aurelia coerulea | evm.model.ptg000009l.985 | KAB0354696.1 | hypothetical protein FD755_022155 [Muntiacus reevesi] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora cytherea | acyt_s0009.g129.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora digitifera | chr2Alt.g3081.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0039.g143.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Actinia equina | EGACTEQ4350005891-PA | XP_031551939.1 | U6 snRNA-associated Sm-like protein LSm2 [Actinia tenebrosa] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Actinia equina | EGACTEQ4350021560-PA | XP_031551939.1 | U6 snRNA-associated Sm-like protein LSm2 [Actinia tenebrosa] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Actinia equina | EGACTEQ4350021560-PB | XP_031551939.1 | U6 snRNA-associated Sm-like protein LSm2 [Actinia tenebrosa] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora florida | aflo_s0097.g52.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora gemmifera | agem_s0014.g150.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora hyacinthus | ahya_s0107.g77.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g13474 | XP_031551939.1 | U6 snRNA-associated Sm-like protein LSm2 [Actinia tenebrosa] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Acropora loripes | alor_g12817.t1 | XP_029195609.1 | U6 snRNA-associated Sm-like protein LSm2 [Acropora millepora] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Actinia mediterranea | ENSQPTP00000009525.1 | XP_031551939.1 | U6 snRNA-associated Sm-like protein LSm2 [Actinia tenebrosa] | Q9Y333 U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX= | JBrowse |
| Actinia mediterranea | ENSQPTP00000009531.1 | none | – | JBrowse |
