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This orthogroup contains 2,234 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 2,234 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF01410 | COLFI — Fibrillar collagen C-terminal domain | 1918 / 2,234 | 85.9% | 94.4% of 2,032 | ≥80% support |
| GO | GO:0005201 Molecular Function | extracellular matrix structural constituent | 1932 / 2,234 | 86.5% | 96.1% of 2,010 | ≥80% support |
| PANTHER | PTHR24023 | COLLAGEN ALPHA | 1668 / 2,234 | 74.7% | 94.7% of 1,762 | ≥50% support |
| Pfam | PF01391 | Collagen | 1660 / 2,234 | 74.3% | 81.7% of 2,032 | ≥50% support |
| GO | GO:0005615 Cellular Component | extracellular space | 1669 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
| GO | GO:0031012 Cellular Component | extracellular matrix | 1668 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hemicorallium imperiale | evm.model.Chr02.1441 | XP_028396706.1 | fibril-forming collagen alpha chain-like [Dendronephthya gigantea] | P08121 Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3 | JBrowse |
| Hemicorallium imperiale | evm.model.Chr02.1720 | CAB3979669.1 | collagen alpha-1(I) chain-like, partial [Paramuricea clavata] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Hemicorallium imperiale | evm.model.Chr02.1761 | CAB3986565.1 | Collagen alpha-1(II) chain, partial [Paramuricea clavata] | P08121 Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3 | JBrowse |
| Hemicorallium imperiale | evm.model.Chr02.1785 | CAB4008744.1 | collagen alpha-1(I) chain-like, partial [Paramuricea clavata] | P13941 Collagen alpha-1(III) chain OS=Rattus norvegicus OX=10116 GN | JBrowse |
| Hemicorallium imperiale | evm.model.Chr02.1996 | CAB4002381.1 | collagen alpha-2(I) chain-like [Paramuricea clavata] | P08121 Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3 | JBrowse |
| Hemicorallium imperiale | evm.model.Chr02.2229 | CAB4000172.1 | collagen alpha-1(I) chain-like, partial [Paramuricea clavata] | Q6P4Z2 Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN= | JBrowse |
| Hemicorallium imperiale | evm.model.Chr02.2308 | XP_046846903.1 | collagen alpha-4(VI) chain-like [Xenia sp. Carnegie-2017] | P12105 Collagen alpha-1(III) chain (Fragments) OS=Gallus gallus OX= | JBrowse |
| Hemicorallium imperiale | evm.model.Chr15.330 | CAB3989464.1 | collagen alpha-1(V) chain isoform X1, partial [Paramuricea clavata] | Q60467 Collagen alpha-1(V) chain OS=Cricetulus longicaudatus OX=100 | JBrowse |
| Hemicorallium imperiale | evm.model.Chr15.612 | XP_028394844.1 | collagen alpha-1(I) chain-like [Dendronephthya gigantea] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
