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Support counts the member genes carrying the term. % of genes is that count over all 1,009 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10390 | HOMEOBOX PROTEIN SIX | 865 / 1,009 | 85.7% | 98.2% of 881 | ≥80% support |
| Pfam | PF16878 | SIX1_SD — Transcriptional regulator, SIX1, N-terminal SD domain | 880 / 1,009 | 87.2% | 97.9% of 899 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 880 / 1,009 | 87.2% | 99.7% of 883 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 880 / 1,009 | 87.2% | 99.7% of 883 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 879 / 1,009 | 87.1% | 99.6% of 883 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 873 / 1,009 | 86.5% | 98.9% of 883 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 865 / 1,009 | 85.7% | 98.0% of 883 | ≥80% support |
| GO | GO:0005667 Cellular Component | transcription regulator complex | 865 / 1,009 | 85.7% | 98.0% of 883 | ≥80% support |
| Pfam | PF00046 | Homeodomain | 526 / 1,009 | 52.1% | 58.5% of 899 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 644 / 1,009 | 63.8% | 72.9% of 883 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Haliclystus octoradiatus | BRAKERHOCP00005001265.1 | AEP44001.1 | sine oculis-like transcription factor Six4/5B [Craspedacusta sowerbii] | Q9NPC8 Homeobox protein SIX2 OS=Homo sapiens OX=9606 GN=SIX2 PE=1 S | JBrowse |
| Haliclystus octoradiatus | BRAKERHOCP00005007279.1 | AHX03094.1 | optix, partial [Aurelia sp. 1 NN-2010a] | O73916 Homeobox protein SIX3 OS=Oryzias latipes OX=8090 GN=six3 PE= | JBrowse |
| Haliclystus octoradiatus | BRAKERHOCP00005007940.1 | AEP44002.1 | sine oculis-like transcription factor [Craspedacusta sowerbii] | Q61321 Homeobox protein SIX4 OS=Mus musculus OX=10090 GN=Six4 PE=1 | JBrowse |
| Haliclystus octoradiatus | BRAKERHOCP00005010591.1 | AHX03093.1 | sine oculis, partial [Aurelia sp. 1 NN-2010a] | Q6NZ04 Homeobox protein six1b OS=Danio rerio OX=7955 GN=six1b PE=1 | JBrowse |
| Haliclystus octoradiatus | g14236.t1.1 | none | – | JBrowse | |
| Haliclystus octoradiatus | g3082.t1.1 | none | – | JBrowse | |
| Haliclystus octoradiatus | g3514.t1.1 | none | – | JBrowse | |
| Haliclystus octoradiatus | g6477.t1.1 | none | – | JBrowse |
