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Support counts the member genes carrying the term. % of genes is that count over all 45 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF04542 | Sigma70_r2 — Sigma-70 region 2 | 37 / 45 | 82.2% | 86.1% of 43 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 37 / 45 | 82.2% | 86.1% of 43 | ≥80% support |
| PANTHER | PTHR30603 | RNA POLYMERASE SIGMA FACTOR RPO | 35 / 45 | 77.8% | 87.5% of 40 | ≥50% support |
| Pfam | PF00140 | Sigma70_r1_2 — Sigma-70 factor, region 1.2 | 33 / 45 | 73.3% | 76.7% of 43 | ≥50% support |
| Pfam | PF04539 | Sigma70_r3 — Sigma-70 region 3 | 33 / 45 | 73.3% | 76.7% of 43 | ≥50% support |
| Pfam | PF04545 | Sigma70_r4 — Sigma-70, region 4 | 32 / 45 | 71.1% | 74.4% of 43 | ≥50% support |
| GO | GO:0016987 Molecular Function | sigma factor activity | 35 / 45 | 77.8% | 81.4% of 43 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hydra oligactis | HOLI00001.G52403 | WP_095156168.1 | MULTISPECIES: RNA polymerase sigma factor RpoD [unclassified Pseudomonas] | P52326 RNA polymerase sigma factor RpoD OS=Pseudomonas protegens (s | JBrowse |
| Hydra oligactis | HOLI00001.G54019 | WP_042121895.1 | RNA polymerase sigma factor RpoS [Pseudomonas japonica] | P45684 RNA polymerase sigma factor RpoS OS=Pseudomonas aeruginosa ( | JBrowse |
| Hydra oligactis | HOLI00002.G20008 | MBA4240022.1 | RNA polymerase subunit sigma [Sphingobacteriaceae bacterium] | P33656 RNA polymerase sigma factor SigA OS=Clostridium acetobutylic | JBrowse |
| Hydra oligactis | HOLI00002.G20773 | MBL7935574.1 | sigma-70 family RNA polymerase sigma factor [Bacteroidia bacterium] | O66381 RNA polymerase sigma factor SigA OS=Halalkalibacterium halod | JBrowse |
| Hydra oligactis | HOLI00150.G2065 | WP_105260453.1 | RNA polymerase sigma factor RpoD [Rhodoferax sp. TS-BS-61-7] | P52325 RNA polymerase sigma factor RpoD OS=Neisseria gonorrhoeae OX | JBrowse |
| Hydra oligactis | HOLI00150.G2249 | WP_105260668.1 | sigma-70 family RNA polymerase sigma factor [Rhodoferax sp. TS-BS-61-7] | P45684 RNA polymerase sigma factor RpoS OS=Pseudomonas aeruginosa ( | JBrowse |
| Hydra oligactis | HOLI00353.G43124 | WP_031567858.1 | RNA polymerase sigma factor RpoS [Pararheinheimera texasensis] | P13445 RNA polymerase sigma factor RpoS OS=Escherichia coli (strain | JBrowse |
| Hydra oligactis | HOLI02858.G48416 | WP_031567237.1 | RNA polymerase sigma factor RpoD [Pararheinheimera texasensis] | P00579 RNA polymerase sigma factor RpoD OS=Escherichia coli (strain | JBrowse |
| Hydra oligactis | HOLI02858.G48417 | MBP8226906.1 | RNA polymerase sigma factor RpoD [Pararheinheimera sp.] | P43344 RNA polymerase sigma factor RpoD (Fragment) OS=Serratia marc | JBrowse |
| Hydra oligactis | HOLI03692.G28518 | MBX9808832.1 | hypothetical protein [Candidatus Gracilibacteria bacterium] | P52328 RNA polymerase sigma factor SigA OS=Bacillus sp. OX=1409 GN= | JBrowse |
