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Support counts the member genes carrying the term. % of genes is that count over all 45 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF04542 | Sigma70_r2 — Sigma-70 region 2 | 37 / 45 | 82.2% | 86.1% of 43 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 37 / 45 | 82.2% | 86.1% of 43 | ≥80% support |
| PANTHER | PTHR30603 | RNA POLYMERASE SIGMA FACTOR RPO | 35 / 45 | 77.8% | 87.5% of 40 | ≥50% support |
| Pfam | PF00140 | Sigma70_r1_2 — Sigma-70 factor, region 1.2 | 33 / 45 | 73.3% | 76.7% of 43 | ≥50% support |
| Pfam | PF04539 | Sigma70_r3 — Sigma-70 region 3 | 33 / 45 | 73.3% | 76.7% of 43 | ≥50% support |
| Pfam | PF04545 | Sigma70_r4 — Sigma-70, region 4 | 32 / 45 | 71.1% | 74.4% of 43 | ≥50% support |
| GO | GO:0016987 Molecular Function | sigma factor activity | 35 / 45 | 77.8% | 81.4% of 43 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Aurelia aurita complex sp. Pacific | scaffold228.g19.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold2648.g2.t1 | none | – | JBrowse | |
| Actinernus sp. WN-2022 | Acti_006273-T1 | none | – | JBrowse | |
| Calvadosia cruxmelitensis | g1015.t1 | KAJ8020089.1 | Histone-lysine N-methyltransferase EZH2 [Holothuria leucospilota] | Q15910 Histone-lysine N-methyltransferase EZH2 OS=Homo sapiens OX=9 | JBrowse |
| Calvadosia cruxmelitensis | g537.t1 | XP_029195386.2 | uncharacterized protein LOC114961005 isoform X3 [Acropora millepora] | O51222 Protein HflC OS=Borreliella burgdorferi (strain ATCC 35210 / | JBrowse |
| Cassiopea xamachana | Cxam_g10693.t1 | MBN2490102.1 | RNA polymerase sigma factor RpoD [Planctomycetota bacterium] | P56835 RNA polymerase sigma factor SigA OS=Chlamydia muridarum (str | JBrowse |
| Cassiopea xamachana | Cxam_g16054.t1 | MBN2491251.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | P26683 RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7 | JBrowse |
| Cassiopea xamachana | Cxam_g19232.t1 | MBN2492606.1 | orotidine-5'-phosphate decarboxylase [Planctomycetota bacterium] | B0K2E7 Orotidine 5'-phosphate decarboxylase OS=Thermoanaerobacter s | JBrowse |
| Cassiopea xamachana | Cxam_g21211.t1 | MBN2490795.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | P0A4I9 RNA polymerase sigma factor SigA OS=Streptococcus pneumoniae | JBrowse |
| Cassiopea xamachana | Cxam_g879.t1 | WP_170324475.1 | RNA polymerase sigma factor RpoD [Ruegeria arenilitoris] | D5AQI9 RNA polymerase sigma factor RpoD OS=Rhodobacter capsulatus ( | JBrowse |
| Hydractinia echinata | ENSDJXP00000043920.1 | NQZ66076.1 | RNA polymerase sigma factor [Mycoplasmatales bacterium] | P06224 RNA polymerase sigma factor SigA OS=Bacillus subtilis (strai | JBrowse |
| Hemicorallium imperiale | evm.model.Contig129.25 | OED34691.1 | RNA polymerase sigma factor RpoD [PVC group bacterium (ex Bugula neritina AB1)] | Q9Z7F0 RNA polymerase sigma factor SigA OS=Chlamydia pneumoniae OX= | JBrowse |
| Hemicorallium imperiale | evm.model.Contig136.37 | CDA80385.1 | glycine--tRNA ligase [Clostridium sp. CAG:594] | Q4A5V9 Glycine--tRNA ligase OS=Mycoplasmopsis synoviae (strain 53) | JBrowse |
| Hemicorallium imperiale | evm.model.Contig136.38 | HHX07605.1 | RNA polymerase sigma factor RpoD [Erysipelothrix sp.] | P43344 RNA polymerase sigma factor RpoD (Fragment) OS=Serratia marc | JBrowse |
| Hydra oligactis | HOLI00001.G52403 | WP_095156168.1 | MULTISPECIES: RNA polymerase sigma factor RpoD [unclassified Pseudomonas] | P52326 RNA polymerase sigma factor RpoD OS=Pseudomonas protegens (s | JBrowse |
| Hydra oligactis | HOLI00001.G54019 | WP_042121895.1 | RNA polymerase sigma factor RpoS [Pseudomonas japonica] | P45684 RNA polymerase sigma factor RpoS OS=Pseudomonas aeruginosa ( | JBrowse |
| Hydra oligactis | HOLI00002.G20008 | MBA4240022.1 | RNA polymerase subunit sigma [Sphingobacteriaceae bacterium] | P33656 RNA polymerase sigma factor SigA OS=Clostridium acetobutylic | JBrowse |
| Hydra oligactis | HOLI00002.G20773 | MBL7935574.1 | sigma-70 family RNA polymerase sigma factor [Bacteroidia bacterium] | O66381 RNA polymerase sigma factor SigA OS=Halalkalibacterium halod | JBrowse |
| Hydra oligactis | HOLI00150.G2065 | WP_105260453.1 | RNA polymerase sigma factor RpoD [Rhodoferax sp. TS-BS-61-7] | P52325 RNA polymerase sigma factor RpoD OS=Neisseria gonorrhoeae OX | JBrowse |
| Hydra oligactis | HOLI00150.G2249 | WP_105260668.1 | sigma-70 family RNA polymerase sigma factor [Rhodoferax sp. TS-BS-61-7] | P45684 RNA polymerase sigma factor RpoS OS=Pseudomonas aeruginosa ( | JBrowse |
