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Support counts the member genes carrying the term. % of genes is that count over all 2,252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 1928 / 2,252 | 85.6% | 97.9% of 1,970 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1977 / 2,252 | 87.8% | 99.8% of 1,982 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1923 / 2,252 | 85.4% | 97.0% of 1,982 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1851 / 2,252 | 82.2% | 93.4% of 1,982 | ≥80% support |
| PANTHER | PTHR24329 | HOMEOBOX PROTEIN ARISTALESS | 1394 / 2,252 | 61.9% | 71.5% of 1,951 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1765 / 2,252 | 78.4% | 89.1% of 1,982 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1404 / 2,252 | 62.3% | 70.8% of 1,982 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hydra viridissima | BRAKERKREP00000003592.1 | XP_012556935.2 | diencephalon/mesencephalon homeobox protein 1 [Hydra vulgaris] | P29506 Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Hydra viridissima | BRAKERKREP00000004452.1 | XP_012566844.1 | short stature homeobox protein [Hydra vulgaris] | O42250 Visual system homeobox 1 OS=Danio rerio OX=7955 GN=vsx1 PE=1 | JBrowse |
| Hydra viridissima | BRAKERKREP00000005324.1 | XP_002168027.1 | aristaless-related homeobox protein [Hydra vulgaris] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Hydra viridissima | BRAKERKREP00000011140.1 | NP_001296713.1 | paired box protein Pax-3-like [Hydra vulgaris] | P53544 Homeobox protein goosecoid OS=Danio rerio OX=7955 GN=gsc PE= | JBrowse |
| Hydra viridissima | BRAKERKREP00000012310.1 | XP_004208605.2 | visual system homeobox 2-like [Hydra vulgaris] | O42250 Visual system homeobox 1 OS=Danio rerio OX=7955 GN=vsx1 PE=1 | JBrowse |
| Hydra viridissima | BRAKERKREP00000014037.1 | XP_012553912.2 | uncharacterized protein LOC100203334 isoform X2 [Hydra vulgaris] | P55864 Paired box protein Pax-6 OS=Xenopus laevis OX=8355 GN=pax6 P | JBrowse |
| Hydra viridissima | BRAKERKREP00000017130.1 | XP_012557153.2 | diencephalon/mesencephalon homeobox protein 1-A isoform X2 [Hydra vulgaris] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Hydra viridissima | BRAKERKREP00000019096.1 | NP_001296658.1 | retinal homeobox protein Rax-like [Hydra vulgaris] | O42201 Retinal homeobox protein Rx-A OS=Xenopus laevis OX=8355 GN=r | JBrowse |
| Hydra viridissima | BRAKERKREP00000026627.1 | XP_047127024.1 | aristaless homeobox protein isoform X2 [Hydra vulgaris] | Q26657 Aristaless homeobox protein (Fragment) OS=Strongylocentrotus | JBrowse |
| Hydra viridissima | BRAKERKREP00000026628.1 | XP_002160816.1 | homeobox protein aristaless isoform X1 [Hydra vulgaris] | Q26657 Aristaless homeobox protein (Fragment) OS=Strongylocentrotus | JBrowse |
| Hydra viridissima | g10684.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g11228.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g14171.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g16259.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g19171.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g19171.t2.1 | none | – | JBrowse | |
| Hydra viridissima | g24328.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g25034.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g25597.t1.1 | none | – | JBrowse | |
| Hydra viridissima | g8233.t1.1 | none | – | JBrowse |
