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Support counts the member genes carrying the term. % of genes is that count over all 2,252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 1928 / 2,252 | 85.6% | 97.9% of 1,970 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1977 / 2,252 | 87.8% | 99.8% of 1,982 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1923 / 2,252 | 85.4% | 97.0% of 1,982 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1851 / 2,252 | 82.2% | 93.4% of 1,982 | ≥80% support |
| PANTHER | PTHR24329 | HOMEOBOX PROTEIN ARISTALESS | 1394 / 2,252 | 61.9% | 71.5% of 1,951 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1765 / 2,252 | 78.4% | 89.1% of 1,982 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1404 / 2,252 | 62.3% | 70.8% of 1,982 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000003550.1 | CAB3986911.1 | homeobox aristaless-like 4 [Paramuricea clavata] | O35137 Homeobox protein aristaless-like 4 OS=Mus musculus OX=10090 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000005313.1 | CAB4001093.1 | Homeobox aristaless-like 4 [Paramuricea clavata] | Q06348 Paired mesoderm homeobox protein 2 OS=Mus musculus OX=10090 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000005327.1 | XP_028411009.1 | paired mesoderm homeobox protein 1-like [Dendronephthya gigantea] | Q06348 Paired mesoderm homeobox protein 2 OS=Mus musculus OX=10090 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000011887.1 | CAB4009030.1 | retinal homeobox Rx1-like [Paramuricea clavata] | Q7YRX0 Retina and anterior neural fold homeobox protein 2 OS=Bos ta | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000012551.1 | CAB3997719.1 | paired box Pax-3 isoform X2 [Paramuricea clavata] | P47239 Paired box protein Pax-7 OS=Mus musculus OX=10090 GN=Pax7 PE | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000012556.1 | CAB3997719.1 | paired box Pax-3 isoform X2 [Paramuricea clavata] | P47239 Paired box protein Pax-7 OS=Mus musculus OX=10090 GN=Pax7 PE | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000016149.1 | CAB3982040.1 | homeobox unc-4 homolog [Paramuricea clavata] | P97830 Homeobox protein unc-4 homolog OS=Rattus norvegicus OX=10116 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000016168.1 | CAB3982040.1 | homeobox unc-4 homolog [Paramuricea clavata] | P97830 Homeobox protein unc-4 homolog OS=Rattus norvegicus OX=10116 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000016534.1 | CAB3990432.1 | homeobox unc-4 homolog [Paramuricea clavata] | P29506 Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000021750.1 | XP_028401359.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000021767.1 | XP_028401359.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000021783.1 | XP_028401359.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000021796.1 | XP_028401359.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000021805.1 | XP_028401359.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000021811.1 | XP_028401359.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000021815.1 | XP_028401359.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000023526.1 | CAB4032863.1 | Short stature homeobox 2 [Paramuricea clavata] | O15266 Short stature homeobox protein OS=Homo sapiens OX=9606 GN=SH | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000025074.1 | XP_028418907.1 | visual system homeobox 2-like [Dendronephthya gigantea] | P58304 Visual system homeobox 2 OS=Homo sapiens OX=9606 GN=VSX2 PE= | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000025080.1 | XP_028418907.1 | visual system homeobox 2-like [Dendronephthya gigantea] | Q9IAL1 Visual system homeobox 2 OS=Gallus gallus OX=9031 GN=VSX2 PE | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000027142.1 | XP_028407301.1 | aristaless-related homeobox protein-like [Dendronephthya gigantea] | Q96QS3 Homeobox protein ARX OS=Homo sapiens OX=9606 GN=ARX PE=1 SV= | JBrowse |
