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This orthogroup contains 1,036 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,036 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR18934 | ATP-DEPENDENT RNA HELICASE | 815 / 1,036 | 78.7% | 99.5% of 819 | ≥50% support |
| Pfam | PF21010 | HA2_C — Helicase associated domain (HA2), ratchet-like | 640 / 1,036 | 61.8% | 71.9% of 890 | ≥50% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 630 / 1,036 | 60.8% | 70.8% of 890 | ≥50% support |
| Pfam | PF04408 | HA2_N — Helicase associated domain (HA2), winged-helix | 630 / 1,036 | 60.8% | 70.8% of 890 | ≥50% support |
| Pfam | PF07717 | OB_NTP_bind — Oligonucleotide/oligosaccharide-binding (OB)-fold | 628 / 1,036 | 60.6% | 70.6% of 890 | ≥50% support |
| Pfam | PF00270 | DEAD | 613 / 1,036 | 59.2% | 68.9% of 890 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 815 / 1,036 | 78.7% | 93.8% of 869 | ≥50% support |
| GO | GO:0004386 Molecular Function | helicase activity | 815 / 1,036 | 78.7% | 93.8% of 869 | ≥50% support |
| GO | GO:0005622 Cellular Component | intracellular anatomical structure | 815 / 1,036 | 78.7% | 93.8% of 869 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 616 / 1,036 | 59.5% | 70.9% of 869 | ≥50% support |
| GO | GO:0005524 Molecular Function | ATP binding | 615 / 1,036 | 59.4% | 70.8% of 869 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000000246.1 | CAB4011540.1 | ATP-dependent RNA helicase A-like isoform X1, partial [Paramuricea clavata] | O70133 ATP-dependent RNA helicase A OS=Mus musculus OX=10090 GN=Dhx | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000000259.1 | XP_028409154.1 | ATP-dependent RNA helicase A-like [Dendronephthya gigantea] | Q5R874 ATP-dependent RNA helicase A OS=Pongo abelii OX=9601 GN=DHX9 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000000265.1 | XP_028409154.1 | ATP-dependent RNA helicase A-like [Dendronephthya gigantea] | Q08211 ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000000285.1 | XP_028409154.1 | ATP-dependent RNA helicase A-like [Dendronephthya gigantea] | Q08211 ATP-dependent RNA helicase A OS=Homo sapiens OX=9606 GN=DHX9 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000007505.1 | XP_028396420.1 | ATP-dependent DNA/RNA helicase DHX36-like [Dendronephthya gigantea] | Q05B79 ATP-dependent DNA/RNA helicase DHX36 OS=Bos taurus OX=9913 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000007526.1 | XP_028396420.1 | ATP-dependent DNA/RNA helicase DHX36-like [Dendronephthya gigantea] | Q8VHK9 ATP-dependent DNA/RNA helicase DHX36 OS=Mus musculus OX=1009 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000007540.1 | XP_028396420.1 | ATP-dependent DNA/RNA helicase DHX36-like [Dendronephthya gigantea] | Q05B79 ATP-dependent DNA/RNA helicase DHX36 OS=Bos taurus OX=9913 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000007560.1 | XP_028396420.1 | ATP-dependent DNA/RNA helicase DHX36-like [Dendronephthya gigantea] | Q05B79 ATP-dependent DNA/RNA helicase DHX36 OS=Bos taurus OX=9913 G | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000007572.1 | XP_028396420.1 | ATP-dependent DNA/RNA helicase DHX36-like [Dendronephthya gigantea] | Q05B79 ATP-dependent DNA/RNA helicase DHX36 OS=Bos taurus OX=9913 G | JBrowse |
