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Support counts the member genes carrying the term. % of genes is that count over all 397 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00313 | CSD — 'Cold-shock' DNA-binding domain | 349 / 397 | 87.9% | 99.4% of 351 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 359 / 397 | 90.4% | 100.0% of 359 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 335 / 397 | 84.4% | 93.3% of 359 | ≥80% support |
| PANTHER | PTHR11544 | COLD SHOCK DOMAIN CONTAINING PROTEINS | 245 / 397 | 61.7% | 68.3% of 359 | ≥50% support |
| GO | GO:0010468 Biological Process | regulation of gene expression | 236 / 397 | 59.5% | 65.7% of 359 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000031036.1 | CAB4007399.1 | nuclease-sensitive element-binding 1-like isoform X1 [Paramuricea clavata] | P41824 Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV= | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000031040.1 | CAB4007399.1 | nuclease-sensitive element-binding 1-like isoform X1 [Paramuricea clavata] | P41824 Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV= | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000036960.1 | CAB4011042.1 | lin-28 homolog A-like [Paramuricea clavata] | Q94C69 Cold shock domain-containing protein 3 OS=Arabidopsis thalia | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000036971.1 | CAB4011042.1 | lin-28 homolog A-like [Paramuricea clavata] | O65639 Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 | JBrowse |
