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This orthogroup contains 364 genes from 136 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 364 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR24208 | LIM/HOMEOBOX PROTEIN LHX | 334 / 364 | 91.8% | 100.0% of 334 | ≥80% support |
| Pfam | PF00412 | LIM | 329 / 364 | 90.4% | 98.5% of 334 | ≥80% support |
| Pfam | PF00046 | Homeodomain | 320 / 364 | 87.9% | 95.8% of 334 | ≥80% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 334 / 364 | 91.8% | 100.0% of 334 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 334 / 364 | 91.8% | 100.0% of 334 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 334 / 364 | 91.8% | 100.0% of 334 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 334 / 364 | 91.8% | 100.0% of 334 | ≥80% support |
| GO | GO:0030182 Biological Process | neuron differentiation | 334 / 364 | 91.8% | 100.0% of 334 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 320 / 364 | 87.9% | 95.8% of 334 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 266 / 364 | 73.1% | 79.6% of 334 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000003017.1 | CAB3988810.1 | LIM homeobox transcription factor 1-beta-like isoform X4 [Paramuricea clavata] | Q8UVR3 LIM homeobox transcription factor 1-beta.1 OS=Xenopus laevis | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000003026.1 | CAB3988810.1 | LIM homeobox transcription factor 1-beta-like isoform X4 [Paramuricea clavata] | P53413 LIM/homeobox protein LMX-1.2 OS=Gallus gallus OX=9031 GN=LMX | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000003033.1 | XP_028394704.1 | LIM homeobox transcription factor 1-beta-like isoform X1 [Dendronephthya gigantea] | P53413 LIM/homeobox protein LMX-1.2 OS=Gallus gallus OX=9031 GN=LMX | JBrowse |
