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This orthogroup contains 319 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 319 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11021 | SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F | 283 / 319 | 88.7% | 99.7% of 284 | ≥80% support |
| Pfam | PF01423 | LSM | 284 / 319 | 89.0% | 100.0% of 284 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 284 / 319 | 89.0% | 100.0% of 284 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 283 / 319 | 88.7% | 99.7% of 284 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 160 / 319 | 50.2% | 56.3% of 284 | ≥50% support |
| GO | GO:0034715 Cellular Component | pICln-Sm protein complex | 160 / 319 | 50.2% | 56.3% of 284 | ≥50% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 160 / 319 | 50.2% | 56.3% of 284 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000005137.1 | XP_028414433.1 | small nuclear ribonucleoprotein F [Dendronephthya gigantea] | Q3T0Z8 Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=S | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000005146.1 | XP_028414433.1 | small nuclear ribonucleoprotein F [Dendronephthya gigantea] | Q3T0Z8 Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=S | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000005155.1 | XP_028414433.1 | small nuclear ribonucleoprotein F [Dendronephthya gigantea] | Q3T0Z8 Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=S | JBrowse |
