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This orthogroup contains 305 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 305 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23270 | PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 | 257 / 305 | 84.3% | 100.0% of 257 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 257 / 305 | 84.3% | 99.2% of 259 | ≥80% support |
| GO | GO:0005730 Cellular Component | nucleolus | 257 / 305 | 84.3% | 99.2% of 259 | ≥80% support |
| GO | GO:0006364 Biological Process | rRNA processing | 257 / 305 | 84.3% | 99.2% of 259 | ≥80% support |
| GO | GO:0032040 Cellular Component | small-subunit processome | 257 / 305 | 84.3% | 99.2% of 259 | ≥80% support |
| Pfam | PF00575 | S1 | 208 / 305 | 68.2% | 91.2% of 228 | ≥50% support |
| Pfam | PF05843 | Suf | 180 / 305 | 59.0% | 79.0% of 228 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 240 / 305 | 78.7% | 92.7% of 259 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 191 / 305 | 62.6% | 73.8% of 259 | ≥50% support |
| GO | GO:0006396 Biological Process | RNA processing | 184 / 305 | 60.3% | 71.0% of 259 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 180 / 305 | 59.0% | 69.5% of 259 | ≥50% support |
| KEGG | K14792 | RRP5, PDCD11 — Ribosome biogenesis | 175 / 305 | 57.4% | 97.2% of 180 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000034271.1 | CAB3976612.1 | RRP5 homolog [Paramuricea clavata] | Q6NS46 Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000034294.1 | CAB3976613.1 | RRP5 homolog [Paramuricea clavata] | Q6NS46 Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000034315.1 | CAB3976613.1 | RRP5 homolog [Paramuricea clavata] | Q6NS46 Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 | JBrowse |
