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This orthogroup contains 304 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 304 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23326 | CCR4 NOT-RELATED | 236 / 304 | 77.6% | 100.0% of 236 | ≥50% support |
| Pfam | PF04153 | NOT2_3_5_C — NOT2/NOT3/NOT5 C-terminal | 231 / 304 | 76.0% | 100.0% of 231 | ≥50% support |
| GO | GO:0000289 Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | 236 / 304 | 77.6% | 99.6% of 237 | ≥50% support |
| GO | GO:0000932 Cellular Component | P-body | 236 / 304 | 77.6% | 99.6% of 237 | ≥50% support |
| GO | GO:0030015 Cellular Component | CCR4-NOT core complex | 236 / 304 | 77.6% | 99.6% of 237 | ≥50% support |
| GO | GO:2000036 Biological Process | regulation of stem cell population maintenance | 236 / 304 | 77.6% | 99.6% of 237 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 231 / 304 | 76.0% | 97.5% of 237 | ≥50% support |
| KEGG | K12605 | CNOT2, NOT2 — Messenger RNA biogenesis | 219 / 304 | 72.0% | 99.6% of 220 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000027762.1 | XP_028409175.1 | CCR4-NOT transcription complex subunit 2-like isoform X1 [Dendronephthya gigantea] | Q8C5L3 CCR4-NOT transcription complex subunit 2 OS=Mus musculus OX= | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000027777.1 | XP_028409175.1 | CCR4-NOT transcription complex subunit 2-like isoform X1 [Dendronephthya gigantea] | Q8C5L3 CCR4-NOT transcription complex subunit 2 OS=Mus musculus OX= | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000027793.1 | XP_028409175.1 | CCR4-NOT transcription complex subunit 2-like isoform X1 [Dendronephthya gigantea] | Q8C5L3 CCR4-NOT transcription complex subunit 2 OS=Mus musculus OX= | JBrowse |
