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This orthogroup contains 281 genes from 148 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 281 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10644 | DNA REPAIR/RNA PROCESSING CPSF FAMILY | 248 / 281 | 88.3% | 99.6% of 249 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 249 / 281 | 88.6% | 100.0% of 249 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 247 / 281 | 87.9% | 99.2% of 249 | ≥80% support |
| GO | GO:0006281 Biological Process | DNA repair | 245 / 281 | 87.2% | 98.4% of 249 | ≥80% support |
| GO | GO:0035861 Cellular Component | site of double-strand break | 245 / 281 | 87.2% | 98.4% of 249 | ≥80% support |
| GO | GO:0043161 Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | 245 / 281 | 87.2% | 98.4% of 249 | ≥80% support |
| Pfam | PF10433 | MMS1_N — Mono-functional DNA-alkylating methyl methanesulfonate N-term | 210 / 281 | 74.7% | 85.4% of 246 | ≥50% support |
| Pfam | PF03178 | CPSF_A — CPSF A subunit region | 201 / 281 | 71.5% | 81.7% of 246 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 201 / 281 | 71.5% | 80.7% of 249 | ≥50% support |
| KEGG | K10610 | DDB1 — DNA repair and recombination proteins | 172 / 281 | 61.2% | 99.4% of 173 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000026673.1 | CAB3977921.1 | DNA damage-binding 1 [Paramuricea clavata] | Q6P6Z0 DNA damage-binding protein 1 OS=Xenopus laevis OX=8355 GN=dd | JBrowse |
