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This orthogroup contains 252 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15608 | SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2 | 225 / 252 | 89.3% | 100.0% of 225 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 209 / 252 | 82.9% | 99.5% of 210 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 225 / 252 | 89.3% | 100.0% of 225 | ≥80% support |
| GO | GO:0005684 Cellular Component | U2-type spliceosomal complex | 225 / 252 | 89.3% | 100.0% of 225 | ≥80% support |
| GO | GO:0005686 Cellular Component | U2 snRNP | 225 / 252 | 89.3% | 100.0% of 225 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 217 / 252 | 86.1% | 96.4% of 225 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 187 / 252 | 74.2% | 83.1% of 225 | ≥50% support |
| KEGG | K13093 | HTATSF1 — Spliceosome | 200 / 252 | 79.4% | 99.0% of 202 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000034182.1 | CAB3977318.1 | HIV Tat-specific factor 1 [Paramuricea clavata] | O43719 17S U2 SnRNP complex component HTATSF1 OS=Homo sapiens OX=96 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000034190.1 | CAB3977318.1 | HIV Tat-specific factor 1 [Paramuricea clavata] | O43719 17S U2 SnRNP complex component HTATSF1 OS=Homo sapiens OX=96 | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000034214.1 | CAB3977318.1 | HIV Tat-specific factor 1 [Paramuricea clavata] | Q5RB63 17S U2 SnRNP complex component HTATSF1 OS=Pongo abelii OX=96 | JBrowse |
