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This orthogroup contains 249 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 249 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD | 194 / 249 | 77.9% | 93.7% of 207 | ≥50% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 179 / 249 | 71.9% | 86.5% of 207 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 194 / 249 | 77.9% | 91.1% of 213 | ≥50% support |
| GO | GO:0005524 Molecular Function | ATP binding | 194 / 249 | 77.9% | 91.1% of 213 | ≥50% support |
| GO | GO:0003724 Molecular Function | RNA helicase activity | 193 / 249 | 77.5% | 90.6% of 213 | ≥50% support |
| KEGG | K12811 | DDX46, PRP5 — Spliceosome | 179 / 249 | 71.9% | 97.3% of 184 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000022201.1 | CAB3988540.1 | probable ATP-dependent RNA helicase DDX46, partial [Paramuricea clavata] | Q62780 Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegic | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000022239.1 | XP_028390960.1 | probable ATP-dependent RNA helicase DDX46 isoform X1 [Dendronephthya gigantea] | Q62780 Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegic | JBrowse |
