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This orthogroup contains 198 genes from 137 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 198 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13047 | PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT | 168 / 198 | 84.9% | 96.6% of 174 | ≥80% support |
| Pfam | PF13869 | NUDIX_2 — Nucleotide hydrolase | 174 / 198 | 87.9% | 100.0% of 174 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 174 / 198 | 87.9% | 100.0% of 174 | ≥80% support |
| GO | GO:0005849 Cellular Component | mRNA cleavage factor complex | 174 / 198 | 87.9% | 100.0% of 174 | ≥80% support |
| GO | GO:0031124 Biological Process | mRNA 3'-end processing | 174 / 198 | 87.9% | 100.0% of 174 | ≥80% support |
| GO | GO:0006397 Biological Process | mRNA processing | 168 / 198 | 84.9% | 96.6% of 174 | ≥80% support |
| GO | GO:0017091 Molecular Function | mRNA 3'-UTR AU-rich region binding | 168 / 198 | 84.9% | 96.6% of 174 | ≥80% support |
| KEGG | K14397 | NUDT21, CPSF5, CFIM25 — Messenger RNA biogenesis | 153 / 198 | 77.3% | 98.7% of 155 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000004918.1 | CAB4027919.1 | cleavage and polyadenylation specificity factor subunit 5 [Paramuricea clavata] | Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 5 OS | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000004928.1 | CAB4027919.1 | cleavage and polyadenylation specificity factor subunit 5 [Paramuricea clavata] | Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 5 OS | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000004937.1 | CAB4027919.1 | cleavage and polyadenylation specificity factor subunit 5 [Paramuricea clavata] | Q6DJE4 Cleavage and polyadenylation specificity factor subunit 5 OS | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000004947.1 | CAB4027919.1 | cleavage and polyadenylation specificity factor subunit 5 [Paramuricea clavata] | Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 5 OS | JBrowse |
