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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN03237-RA | XP_020620058.1 | barH-like 1 homeobox protein [Orbicella faveolata] | Q24256 Homeobox protein B-H2 OS=Drosophila melanogaster OX=7227 GN= | JBrowse |
| Leptoseris scabra | ANN03238-RA | KAJ7378109.1 | hypothetical protein OS493_024774 [Desmophyllum pertusum] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Leptoseris scabra | ANN03239-RA | XP_029213986.2 | homeobox protein MSX-2-like [Acropora millepora] | Q9BZE3 BarH-like 1 homeobox protein OS=Homo sapiens OX=9606 GN=BARH | JBrowse |
| Leptoseris scabra | ANN03241-RA | XP_020620059.1 | barH-like 2 homeobox protein [Orbicella faveolata] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Leptoseris scabra | ANN03545-RA | XP_020627880.1 | homeobox protein Nkx-6.1-like [Orbicella faveolata] | Q60554 Homeobox protein Nkx-6.1 OS=Mesocricetus auratus OX=10036 GN | JBrowse |
| Leptoseris scabra | ANN03653-RA | CAH3125502.1 | unnamed protein product [Porites lobata] | Q6GLB9 Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 | JBrowse |
| Leptoseris scabra | ANN03674-RA | CAH3029131.1 | unnamed protein product [Porites evermanni] | Q06615 Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto | JBrowse |
| Leptoseris scabra | ANN03675-RA | XP_022791939.1 | homeobox protein EMX2-like isoform X1 [Stylophora pistillata] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Leptoseris scabra | ANN03686-RA | CAH3125653.1 | unnamed protein product [Porites lobata] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Leptoseris scabra | ANN03745-RA | CAH3117200.1 | unnamed protein product [Porites lobata] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Leptoseris scabra | ANN03781-RA | CAH3117121.1 | unnamed protein product [Porites lobata] | Q90XN9 Homeobox protein HMX3-B OS=Oryzias latipes OX=8090 GN=hmx3b | JBrowse |
| Leptoseris scabra | ANN03782-RA | XP_020614135.1 | homeobox protein slou-like [Orbicella faveolata] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
| Leptoseris scabra | ANN04205-RA | XP_020623784.1 | homeobox protein MSX-3-like isoform X1 [Orbicella faveolata] | P28361 Homeobox protein MSX-1 OS=Gallus gallus OX=9031 GN=MSX1 PE=2 | JBrowse |
| Leptoseris scabra | ANN04527-RA | CAH3028898.1 | unnamed protein product [Porites evermanni] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Leptoseris scabra | ANN05062-RA | KAJ7392404.1 | hypothetical protein OS493_012066 [Desmophyllum pertusum] | Q804S6 Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV | JBrowse |
| Leptoseris scabra | ANN05212-RA | KAJ7392454.1 | hypothetical protein OS493_012118 [Desmophyllum pertusum] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Leptoseris scabra | ANN09907-RA | XP_020620740.1 | homeobox protein CHOX-CAD-like [Orbicella faveolata] | Q06453 Homeobox protein aristaless OS=Drosophila melanogaster OX=72 | JBrowse |
| Leptoseris scabra | ANN09908-RA | XP_020620740.1 | homeobox protein CHOX-CAD-like [Orbicella faveolata] | Q6SZ65 Homeobox protein orthopedia OS=Lytechinus variegatus OX=7654 | JBrowse |
| Leptoseris scabra | ANN09909-RA | XP_020620740.1 | homeobox protein CHOX-CAD-like [Orbicella faveolata] | P58304 Visual system homeobox 2 OS=Homo sapiens OX=9606 GN=VSX2 PE= | JBrowse |
| Leptoseris scabra | ANN09910-RA | XP_020620740.1 | homeobox protein CHOX-CAD-like [Orbicella faveolata] | G5EDS1 Paired box protein 6 homolog OS=Caenorhabditis elegans OX=62 | JBrowse |
