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Support counts the member genes carrying the term. % of genes is that count over all 2,252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 1928 / 2,252 | 85.6% | 97.9% of 1,970 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1977 / 2,252 | 87.8% | 99.8% of 1,982 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1923 / 2,252 | 85.4% | 97.0% of 1,982 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1851 / 2,252 | 82.2% | 93.4% of 1,982 | ≥80% support |
| PANTHER | PTHR24329 | HOMEOBOX PROTEIN ARISTALESS | 1394 / 2,252 | 61.9% | 71.5% of 1,951 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1765 / 2,252 | 78.4% | 89.1% of 1,982 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1404 / 2,252 | 62.3% | 70.8% of 1,982 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN00292-RA | CAH3028721.1 | unnamed protein product [Porites evermanni] | O42567 Retinal homeobox protein Rx-B OS=Xenopus laevis OX=8355 GN=r | JBrowse |
| Leptoseris scabra | ANN02823-RA | CAH3109926.1 | unnamed protein product [Porites lobata] | Q9I9A2 Retinal homeobox protein Rx2 OS=Oryzias latipes OX=8090 GN=r | JBrowse |
| Leptoseris scabra | ANN05221-RA | KAJ7392467.1 | hypothetical protein OS493_012133 [Desmophyllum pertusum] | Q3LU38 Homeobox protein prophet of Pit-1 OS=Alouatta belzebul OX=30 | JBrowse |
| Leptoseris scabra | ANN18724-RA | XP_015763399.1 | PREDICTED: retinal homeobox protein Rx1-like [Acropora digitifera] | P29506 Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Leptoseris scabra | ANN18725-RA | XP_020611112.1 | ALX homeobox protein 1-like isoform X1 [Orbicella faveolata] | O08934 Homeobox protein unc-4 homolog OS=Mus musculus OX=10090 GN=U | JBrowse |
| Leptoseris scabra | ANN19845-RA | CAH3025913.1 | unnamed protein product [Porites evermanni] | O95076 Homeobox protein aristaless-like 3 OS=Homo sapiens OX=9606 G | JBrowse |
| Leptoseris scabra | ANN22071-RA | XP_020618789.1 | visual system homeobox 2-like [Orbicella faveolata] | Q9IAL1 Visual system homeobox 2 OS=Gallus gallus OX=9031 GN=VSX2 PE | JBrowse |
| Leptoseris scabra | ANN27458-RA | CAH3179642.1 | unnamed protein product [Porites evermanni] | O35750 Short stature homeobox protein 2 (Fragment) OS=Rattus norveg | JBrowse |
| Leptoseris scabra | ANN28204-RA | KAJ7321743.1 | hypothetical protein OS493_034130 [Desmophyllum pertusum] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptoseris scabra | ANN28241-RA | KAJ7381401.1 | hypothetical protein OS493_001535 [Desmophyllum pertusum] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Leptoseris scabra | ANN32675-RA | XP_020632255.1 | homeobox protein goosecoid-like [Orbicella faveolata] | P54366 Homeobox protein goosecoid OS=Drosophila melanogaster OX=722 | JBrowse |
