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This orthogroup contains 296 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 296 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10145 | TRANSCRIPTION ELONGATION FACTOR SPT6 | 264 / 296 | 89.2% | 99.6% of 265 | ≥80% support |
| GO | GO:0006368 Biological Process | transcription elongation by RNA polymerase II | 264 / 296 | 89.2% | 99.6% of 265 | ≥80% support |
| GO | GO:0008023 Cellular Component | transcription elongation factor complex | 264 / 296 | 89.2% | 99.6% of 265 | ≥80% support |
| GO | GO:0031491 Molecular Function | nucleosome binding | 264 / 296 | 89.2% | 99.6% of 265 | ≥80% support |
| GO | GO:0034728 Biological Process | nucleosome organization | 264 / 296 | 89.2% | 99.6% of 265 | ≥80% support |
| GO | GO:0042393 Molecular Function | histone binding | 264 / 296 | 89.2% | 99.6% of 265 | ≥80% support |
| GO | GO:0140673 Biological Process | transcription elongation-coupled chromatin remodeling | 264 / 296 | 89.2% | 99.6% of 265 | ≥80% support |
| Pfam | PF14639 | YqgF — Holliday-junction resolvase-like of SPT6 | 202 / 296 | 68.2% | 78.9% of 256 | ≥50% support |
| Pfam | PF14633 | SH2_2 — SH2 domain | 202 / 296 | 68.2% | 78.9% of 256 | ≥50% support |
| Pfam | PF14635 | HHH_7 — Helix-hairpin-helix motif | 201 / 296 | 67.9% | 78.5% of 256 | ≥50% support |
| Pfam | PF14641 | HTH_44 — Helix-turn-helix DNA-binding domain of SPT6 | 192 / 296 | 64.9% | 75.0% of 256 | ≥50% support |
| Pfam | PF00575 | S1 | 182 / 296 | 61.5% | 71.1% of 256 | ≥50% support |
| Pfam | PF17674 | HHH_9 — HHH domain | 159 / 296 | 53.7% | 62.1% of 256 | ≥50% support |
| GO | GO:0006139 Biological Process | nucleobase-containing compound metabolic process | 203 / 296 | 68.6% | 76.6% of 265 | ≥50% support |
| GO | GO:0003677 Molecular Function | DNA binding | 193 / 296 | 65.2% | 72.8% of 265 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 192 / 296 | 64.9% | 72.5% of 265 | ≥50% support |
| KEGG | K11292 | SUPT6H, SPT6 — Chromosome and associated proteins | 181 / 296 | 61.2% | 98.9% of 183 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN25582-RA | XP_029191982.2 | transcription elongation factor SPT6-like [Acropora millepora] | Q7KZ85 Transcription elongation factor SPT6 OS=Homo sapiens OX=9606 | JBrowse |
