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This orthogroup contains 246 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 246 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR45922 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 | 217 / 246 | 88.2% | 100.0% of 217 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 217 / 246 | 88.2% | 100.0% of 217 | ≥80% support |
| GO | GO:0005847 Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | 217 / 246 | 88.2% | 100.0% of 217 | ≥80% support |
| GO | GO:0006378 Biological Process | obsolete mRNA polyadenylation | 217 / 246 | 88.2% | 100.0% of 217 | ≥80% support |
| GO | GO:0006398 Biological Process | mRNA 3'-end processing by stem-loop binding and cleavage | 217 / 246 | 88.2% | 100.0% of 217 | ≥80% support |
| GO | GO:0098789 Biological Process | obsolete pre-mRNA cleavage required for polyadenylation | 217 / 246 | 88.2% | 100.0% of 217 | ≥80% support |
| Pfam | PF16661 | Lactamase_B_6 — Metallo-beta-lactamase superfamily domain | 189 / 246 | 76.8% | 86.3% of 219 | ≥50% support |
| Pfam | PF10996 | Beta-Casp | 184 / 246 | 74.8% | 84.0% of 219 | ≥50% support |
| Pfam | PF13299 | CPSF100_C — Cleavage and polyadenylation factor 2 C-terminal | 184 / 246 | 74.8% | 84.0% of 219 | ≥50% support |
| Pfam | PF07521 | RMMBL — Zn-dependent metallo-hydrolase RNA specificity domain | 178 / 246 | 72.4% | 81.3% of 219 | ≥50% support |
| KEGG | K14402 | CPSF2, CFT2 — Messenger RNA biogenesis | 169 / 246 | 68.7% | 98.8% of 171 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN08613-RA | XP_044169062.1 | cleavage and polyadenylation specificity factor subunit 2-like [Acropora millepora] | Q10568 Cleavage and polyadenylation specificity factor subunit 2 OS | JBrowse |
