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This orthogroup contains 245 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 245 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR19376 | DNA-DIRECTED RNA POLYMERASE | 215 / 245 | 87.8% | 98.6% of 218 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 219 / 245 | 89.4% | 99.6% of 220 | ≥80% support |
| GO | GO:0003899 Molecular Function | DNA-directed 5'-3' RNA polymerase activity | 218 / 245 | 89.0% | 99.1% of 220 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 218 / 245 | 89.0% | 99.1% of 220 | ≥80% support |
| GO | GO:0001055 Molecular Function | RNA polymerase II activity | 212 / 245 | 86.5% | 96.4% of 220 | ≥80% support |
| GO | GO:0005665 Cellular Component | RNA polymerase II, core complex | 212 / 245 | 86.5% | 96.4% of 220 | ≥80% support |
| Pfam | PF04997 | RNA_pol_Rpb1_1 — RNA polymerase Rpb1, domain 1 | 195 / 245 | 79.6% | 88.6% of 220 | ≥50% support |
| Pfam | PF04998 | RNA_pol_Rpb1_5 — RNA polymerase Rpb1, domain 5 | 191 / 245 | 78.0% | 86.8% of 220 | ≥50% support |
| Pfam | PF00623 | RNA_pol_Rpb1_2 — RNA polymerase Rpb1, domain 2 | 180 / 245 | 73.5% | 81.8% of 220 | ≥50% support |
| Pfam | PF04983 | RNA_pol_Rpb1_3 — RNA polymerase Rpb1, domain 3 | 180 / 245 | 73.5% | 81.8% of 220 | ≥50% support |
| Pfam | PF04992 | RNA_pol_Rpb1_6 — RNA polymerase Rpb1, domain 6 | 180 / 245 | 73.5% | 81.8% of 220 | ≥50% support |
| Pfam | PF05000 | RNA_pol_Rpb1_4 — RNA polymerase Rpb1, domain 4 | 178 / 245 | 72.7% | 80.9% of 220 | ≥50% support |
| Pfam | PF04990 | RNA_pol_Rpb1_7 — RNA polymerase Rpb1, domain 7 | 176 / 245 | 71.8% | 80.0% of 220 | ≥50% support |
| Pfam | PF05001 | RNA_pol_Rpb1_R — RNA polymerase Rpb1 C-terminal repeat | 156 / 245 | 63.7% | 70.9% of 220 | ≥50% support |
| GO | GO:0006366 Biological Process | transcription by RNA polymerase II | 163 / 245 | 66.5% | 74.1% of 220 | ≥50% support |
| KEGG | K03006 | RPB1, POLR2A — DNA repair and recombination proteins | 166 / 245 | 67.8% | 98.2% of 169 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN26967-RA | CAH3175510.1 | unnamed protein product [Porites lobata] | G3MZY8 DNA-directed RNA polymerase II subunit RPB1 OS=Bos taurus OX | JBrowse |
