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This orthogroup contains 344 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 344 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 282 / 344 | 82.0% | 100.0% of 282 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 283 / 344 | 82.3% | 100.0% of 283 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 282 / 344 | 82.0% | 99.7% of 283 | ≥80% support |
| PANTHER | PTHR24012 | RNA BINDING PROTEIN | 270 / 344 | 78.5% | 96.1% of 281 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 272 / 344 | 79.1% | 96.1% of 283 | ≥50% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 271 / 344 | 78.8% | 95.8% of 283 | ≥50% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 270 / 344 | 78.5% | 95.4% of 283 | ≥50% support |
| GO | GO:1990904 Cellular Component | ribonucleoprotein complex | 270 / 344 | 78.5% | 95.4% of 283 | ≥50% support |
| GO | GO:0000381 Biological Process | regulation of alternative mRNA splicing, via spliceosome | 269 / 344 | 78.2% | 95.1% of 283 | ≥50% support |
| GO | GO:0006376 Biological Process | mRNA splice site recognition | 269 / 344 | 78.2% | 95.1% of 283 | ≥50% support |
| KEGG | K13207 | CUGBP, BRUNOL, CELF — Spliceosome | 255 / 344 | 74.1% | 98.1% of 260 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Montipora cactus | BRAKERNUSP00000004298.1 | XP_029190635.1 | CUGBP Elav-like family member 3-A isoform X2 [Acropora millepora] | Q6DGV1 CUGBP Elav-like family member 4 OS=Danio rerio OX=7955 GN=ce | JBrowse |
| Montipora cactus | BRAKERNUSP00000045197.1 | XP_029190634.1 | CUGBP Elav-like family member 3 isoform X1 [Acropora millepora] | Q6DGV1 CUGBP Elav-like family member 4 OS=Danio rerio OX=7955 GN=ce | JBrowse |
| Montipora cactus | g13572.t1.1 | none | – | JBrowse | |
| Montipora cactus | g50348.t1.1 | none | – | JBrowse |
